View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_high_3 (Length: 525)
Name: NF2337_high_3
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 269 - 524
Target Start/End: Original strand, 47803380 - 47803637
Alignment:
| Q |
269 |
aagcgaatgtttgtaacgtggtggttatgttagtttcacctccnnnnnnnnn--aaaactcattttacgtcacttagctcaccgcccgagctacctacat |
366 |
Q |
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| T |
47803380 |
aagcgaatgtttgtaacgtggtggttatgttagtttcacctcctttttttttttaaaactcattttacgtcacttagctcaccgcccgagctacctacat |
47803479 |
T |
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| Q |
367 |
aggacactagtatttacatattgattttgaaacatgtacttttcagtaattgcgtctcataaccgtgttcatgtaaatatgcaattttatcggaatattt |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47803480 |
aggacactagtatttacatattgattttgaaacatgtacttttcagtaatttcatctcataaccgtgttcatgtaaatatgcaattttatctgaatattt |
47803579 |
T |
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| Q |
467 |
tggattctagatggtgaaagggtagactatttttaaaacaaaataagtgttttttcat |
524 |
Q |
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| T |
47803580 |
tggattctagatggtgaaaggttagactatttttaaaacaaaagaagtgtttgttcat |
47803637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 47803130 - 47803305
Alignment:
| Q |
19 |
caaggactgtgctgtgactgcttagagatagtaaagattatagaactaaagttggaccatgattctgagggggtaggtgtgataataacttggattttag |
118 |
Q |
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| T |
47803130 |
caaggactgtgctgtgactgcttagagatagtaaagattatagaactaaagttggaccatgattctgagggggtaggtgtgataataactttgattttag |
47803229 |
T |
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| Q |
119 |
aatatttaccaaatttgttcttattgattgtttaatccataattgttttaggacttttaaaacatcctttgtgcac |
194 |
Q |
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| T |
47803230 |
aatatttaccaaatttgttcttattgattgtttaatccataattgttttaggacttttaaaacatcctttgtgcac |
47803305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 47806141 - 47806211
Alignment:
| Q |
106 |
acttggattttagaatatttaccaaatttgttcttattgat--tgtttaatccataattgttttaggactt |
174 |
Q |
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| T |
47806141 |
acttggattgtagaatatttaccaaattttttcttagagataatgttaaatccataattgttttatgactt |
47806211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 417
Target Start/End: Original strand, 47806322 - 47806353
Alignment:
| Q |
386 |
attgattttgaaacatgtacttttcagtaatt |
417 |
Q |
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| T |
47806322 |
attgattttgaaacatgtacttttcagtaatt |
47806353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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