View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_high_7 (Length: 392)
Name: NF2337_high_7
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 29720081 - 29720330
Alignment:
| Q |
6 |
agaagcaaaggcattcacaagtgtagtcctgtgacacaaaactattcaaccacaatgccatttatgcaggtactacacaatagtaacttatatttctttg |
105 |
Q |
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| T |
29720081 |
agaagcaaaggcattcacaagtgtagtcctgtgacacaaaactattcaaccaccatgccaattatgcaggtactacacaatagtaacttatatttctttg |
29720180 |
T |
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| Q |
106 |
tttgagtctaaattattttgttcaatattttatctattaaatgtgtttttgattgttgtatgtgcagaattttccattttcacatatatatcaagatcta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
29720181 |
tttgagtctaaattattttgttcaatattttatctattaaatatgtttttgattgttgtatgtgcagaattttccattttcacataaatataaagatcta |
29720280 |
T |
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| Q |
206 |
gtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
255 |
Q |
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| T |
29720281 |
gtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
29720330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 29683636 - 29683717
Alignment:
| Q |
311 |
cagctttattatgtgtgtcatactcgtatcatatcaccttcaaatttaggctagtgacaagaataacaaaaattgagaacac |
392 |
Q |
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| T |
29683636 |
cagctttattatgtgtgtcatactcgtatcatatcaccttcaaatttaggctagtgacaagaataacaaaaattgagaacac |
29683717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 29720386 - 29720467
Alignment:
| Q |
311 |
cagctttattatgtgtgtcatactcgtatcatatcaccttcaaatttaggctagtgacaagaataacaaaaattgagaacac |
392 |
Q |
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| T |
29720386 |
cagctttattatgtgtgtcatactcgtatcatatcaccttcaaatttaggctagtgacaagaataacaaaaattgagaacac |
29720467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 29683523 - 29683580
Alignment:
| Q |
198 |
aagatctagtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29683523 |
aagatctagtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
29683580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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