View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2337_high_9 (Length: 333)

Name: NF2337_high_9
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2337_high_9
NF2337_high_9
[»] chr3 (9 HSPs)
chr3 (1-250)||(24923623-24923873)
chr3 (1-212)||(25084846-25085057)
chr3 (1-162)||(24920049-24920210)
chr3 (1-207)||(21584760-21584962)
chr3 (1-180)||(24497422-24497602)
chr3 (1-144)||(24981922-24982065)
chr3 (4-144)||(31825723-31825863)
chr3 (181-315)||(24920199-24920338)
chr3 (289-325)||(24981758-24981794)
[»] chr8 (2 HSPs)
chr8 (1-144)||(14261195-14261338)
chr8 (181-258)||(21143457-21143533)
[»] chr7 (3 HSPs)
chr7 (1-143)||(10575264-10575406)
chr7 (1-143)||(39955008-39955150)
chr7 (4-107)||(354317-354420)
[»] chr5 (3 HSPs)
chr5 (181-258)||(9671416-9671492)
chr5 (181-258)||(13374369-13374445)
chr5 (31-128)||(26358741-26358838)
[»] chr2 (4 HSPs)
chr2 (181-258)||(42929865-42929941)
chr2 (181-258)||(10344528-10344604)
chr2 (24-140)||(41027452-41027568)
chr2 (181-258)||(44820372-44820448)
[»] chr4 (8 HSPs)
chr4 (181-258)||(35785714-35785790)
chr4 (181-258)||(7107882-7107958)
chr4 (181-258)||(23703316-23703392)
chr4 (181-254)||(38158006-38158078)
chr4 (181-254)||(55018743-55018815)
chr4 (31-140)||(22898433-22898542)
chr4 (31-140)||(22950101-22950210)
chr4 (10-122)||(53328612-53328724)
[»] chr1 (3 HSPs)
chr1 (181-258)||(42301058-42301134)
chr1 (181-258)||(52794312-52794388)
chr1 (181-239)||(9627272-9627329)
[»] chr6 (2 HSPs)
chr6 (181-255)||(12600500-12600573)
chr6 (181-258)||(20772906-20772980)
[»] scaffold0060 (1 HSPs)
scaffold0060 (206-258)||(12704-12756)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 24923623 - 24923873
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  24923623 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctc 24923722  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaa-tctgagaaaacg-aagagaaaatttgggaaatttgagaaattaggg 198  Q
    ||||||| | ||||||||||||||| ||||| || |||||||||  ||||||| | |||||||||| || | ||||||||||||||| ||||||||| ||    
T  24923723 cctttccgagtcccttacctcccttaccacgacctgacattttcaagagaaaactttgagaaaacgaaatacaaaatttgggaaattagagaaatta-gg 24923821  T
Q  199 ttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttat 250  Q
     |||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  24923822 atttgaattcgaatgtgagtgagaaaaggtgaaaggggatctgagtatttat 24923873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 25085057 - 25084846
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  25085057 attctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctc 25084958  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatctgagaaaacgaagagaaaatttgggaaatttgagaaattagggtt 200  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||    
T  25084957 cctttcccaatcccttacctccctttccacgacctgacattttcgcgagaaaatttgagaaaacgaaaagaaaattagggaaattagagaaattagggtt 25084858  T
Q  201 ttgaatttgaat 212  Q
    ||||||||||||    
T  25084857 ttgaatttgaat 25084846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 24920049 - 24920210
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  24920049 attctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctc 24920148  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatctgagaaa 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24920149 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatttgagaaa 24920210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 21584760 - 21584962
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  21584760 attctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctc 21584859  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatctgagaaaacgaagagaaaatttgggaaatttgagaaattagggtt 200  Q
    ||||||| | ||||||||||||||||||||| || |||||||||  |||||||| |||||||    |||||||| |||||||||||| | ||||||||||    
T  21584860 cctttcctagtcccttacctccctttccacgacctgacattttcaagagaaaatttgagaaa---cagagaaaa-ttgggaaatttggggaattagggtt 21584955  T
Q  201 ttgaatt 207  Q
    |||||||    
T  21584956 ttgaatt 21584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 24497422 - 24497602
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||    
T  24497422 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctc 24497521  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttcgcgagaaaatctgagaaaacg-aagagaaaatttggg 180  Q
    ||||||| | ||||||||||||||||||||| || |||||||||  |||||||| |||||||||| || ||||||||||||    
T  24497522 cctttccgagtcccttacctccctttccacgccctgacattttcaagagaaaatttgagaaaacgaaatagaaaatttggg 24497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 24982065 - 24981922
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  24982065 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctc 24981966  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttc 144  Q
    ||||||| | |||||||||||| |||||||| || |||||||||    
T  24981965 cctttcctagtcccttacctccttttccacgccctgacattttc 24981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 31825723 - 31825863
Alignment:
Q  4 ctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccct 103  Q
    ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| || |||||||||||||    
T  31825723 ctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccct 31825822  T
Q  104 ttcccaatcccttacctccctttccacggccagacattttc 144  Q
    |||| |  |||||||||||||| ||||| || |||||||||    
T  31825823 ttcctagccccttacctcccttaccacgacctgacattttc 31825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 24920199 - 24920338
Alignment:
Q  181 aaatttgagaaattagggttt-----tgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggtatggtaattggaagcaag 275  Q
    |||||||||||||||||||||     |||| ||||||||| |||| ||| | |||||||||||||||||||||||     ||||||||||||||||| ||    
T  24920199 aaatttgagaaattagggtttgagtttgaaattgaatgtgtgtgagaaa-gatgaaaggggatctgagtatttat-----gtatggtaattggaagcgag 24920292  T
Q  276 cg------ggatgaagaagaagagggaaactgaattttgtgttttc 315  Q
    ||      ||||||||||||||||||||||||||||||||||||||    
T  24920293 cgggatgaggatgaagaagaagagggaaactgaattttgtgttttc 24920338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 24981794 - 24981758
Alignment:
Q  289 aagagggaaactgaattttgtgttttcatctcagtcg 325  Q
    |||||||||||||||||||||||||| |||| |||||    
T  24981794 aagagggaaactgaattttgtgttttgatctgagtcg 24981758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14261195 - 14261338
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    |||||||| ||||| |||||||| || ||||| ||||| || ||||| ||||| || |||||||| |||||||| ||||| |  ||||||||||||||||    
T  14261195 attctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctc 14261294  T
Q  101 cctttcccaatcccttacctccctttccacggccagacattttc 144  Q
    ||||||| ||||||||||||||||||||||| || |||||||||    
T  14261295 cctttcctaatcccttacctccctttccacgacctgacattttc 14261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 21143457 - 21143533
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  21143457 aaatttgagaaattaaggttt-gaatttgaatgtgagtgagaaaagatgaaaagggatctgactatttatgtatggta 21143533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 10575406 - 10575264
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    ||||| || ||||| |||||||| |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| || |  |||||||||||||| |    
T  10575406 attcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccc 10575307  T
Q  101 cctttcccaatcccttacctccctttccacggccagacatttt 143  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||    
T  10575306 cctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 39955008 - 39955150
Alignment:
Q  1 attctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctc 100  Q
    |||||||| |||||||| |  ||||| |  |||||||| ||||||||||| || || |||||||| || |||||||| |||||||| |||||||| ||||    
T  39955008 attctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctc 39955107  T
Q  101 cctttcccaatcccttacctccctttccacggccagacatttt 143  Q
    |||||||||||||||| ||||| |||||||| || ||||||||    
T  39955108 cctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 354420 - 354317
Alignment:
Q  4 ctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccct 103  Q
    ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||| || || |||| ||||||||||||||    
T  354420 ctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccct 354321  T
Q  104 ttcc 107  Q
    ||||    
T  354320 ttcc 354317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 9671492 - 9671416
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  9671492 aaatttgagaaattagggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtatggta 9671416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 13374445 - 13374369
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  13374445 aaatttgagaaattagggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtatggta 13374369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 26358741 - 26358838
Alignment:
Q  31 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccctttcccaatcccttacctccctttcc 128  Q
    |||||||| || || ||||| || ||||| |||||||| ||||||||||| |  || | ||||||||| |||||||| || ||||| ||||| |||||    
T  26358741 cgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcc 26358838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 42929865 - 42929941
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  42929865 aaatttgagaaattagggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtatggta 42929941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 10344528 - 10344604
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    |||||||||||||||| |||| |||||||||||||| ||| ||||| ||||||||||||||| |||||||| ||||||    
T  10344528 aaatttgagaaattagagttt-gaatttgaatgtgattgagaaaagatgaaaggggatctgactatttatgcatggta 10344604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 41027568 - 41027452
Alignment:
Q  24 tgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccctttcccaatcccttacctccc 123  Q
    |||||| |||||||| |||||||| || || || || |||||||||||||| || || | |||||  ||||| |||||||||||||||||||| || ||     
T  41027568 tgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccacct 41027469  T
Q  124 tttccacggccagacat 140  Q
    |||||||| ||||||||    
T  41027468 tttccacgtccagacat 41027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 44820448 - 44820372
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||| ||| | | |||||||||||||||    
T  44820448 aaatttgagaaattagagtttt-aatttgaatgtgagtgagaaaagatgaaaggagatttaactatttatgtatggta 44820372  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 35785790 - 35785714
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||    
T  35785790 aaatttgagaaattagggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttgtgtatggta 35785714  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 7107882 - 7107958
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  7107882 aaatttgagaaattagggttt-gaatttgaatgtgagtgagcaaagatgaaaggggatctgactatttatgtgtggta 7107958  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 23703316 - 23703392
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  23703316 aaatttgagaaatcagggttt-gaatttgaatgtgagtgagaaaagatgaaaagggatctgactatttatgtatggta 23703392  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 38158006 - 38158078
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtat 254  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  38158006 aaatttgagaaattatggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtat 38158078  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 55018743 - 55018815
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtat 254  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  55018743 aaatttgagaaattaaggttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtat 55018815  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 22898542 - 22898433
Alignment:
Q  31 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccctttcccaatcccttacctccctttccac 130  Q
    |||||||| || ||||| || || ||||||||||| |||||||| || || |  |||| |||||| || ||||||||||| ||||| || || |||||||    
T  22898542 cgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccac 22898443  T
Q  131 ggccagacat 140  Q
    | ||||||||    
T  22898442 gcccagacat 22898433  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 22950210 - 22950101
Alignment:
Q  31 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccctttcccaatcccttacctccctttccac 130  Q
    |||||||| || ||||| || || ||||||||||| |||||||| || || |  |||| |||||| || ||||||||||| ||||| || || |||||||    
T  22950210 cgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccac 22950111  T
Q  131 ggccagacat 140  Q
    | ||||||||    
T  22950110 gcccagacat 22950101  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 53328724 - 53328612
Alignment:
Q  10 acaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctttgcacctccctttccca 109  Q
    |||||||| | |||||| |  |||||||| |||||||| ||||| |||||||||||||| || ||||| || | |||||  || || || |||||||| |    
T  53328724 acaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttccta 53328625  T
Q  110 atcccttacctcc 122  Q
    | ||||| |||||    
T  53328624 aaccctttcctcc 53328612  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 42301134 - 42301058
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  42301134 aaatttgagaaattagagttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtatggta 42301058  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 52794388 - 52794312
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||    
T  52794388 aaatttgagaaattagggttt-gaatttgaatatgagtgagaaaagatgaaaggggatctgactatttatgtatggta 52794312  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9627272 - 9627329
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatc 239  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||    
T  9627272 aaatttgagaaattaggattt-gaatttgaatgtgagtgagaaaagatgaaaggggatc 9627329  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 12600573 - 12600500
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatg 255  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  12600573 aaatttgagaaattagagttt-gaatttgaatgtgagtgagaaaagatgaaaggggatctgactatttatgtatg 12600500  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 20772980 - 20772906
Alignment:
Q  181 aaatttgagaaattagggttttgaatttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    |||||||||||||||| |||| ||||||||||||||| ||  |||| ||||| |||||| || |||||||||||||||    
T  20772980 aaatttgagaaattagagttt-gaatttgaatgtgagaga--aaagatgaaaagggatcggactatttatgtatggta 20772906  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 12704 - 12756
Alignment:
Q  206 tttgaatgtgagtgataaaaggtgaaaggggatctgagtatttatgtatggta 258  Q
    ||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  12704 tttgagtgtgagtgagaaaagatgaaaggggatctgactatttatgtatggta 12756  T

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