View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_low_1 (Length: 782)
Name: NF2337_low_1
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 390 - 773
Target Start/End: Complemental strand, 26418674 - 26418297
Alignment:
| Q |
390 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattatt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26418674 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgtctagtgtttaacaagtgtcaatgtctgagaccaacacgtgtgattgcattcaattatc |
26418575 |
T |
|
| Q |
490 |
ccatttcttaaaataaattattatcagtgtcgatatgtcagtgttgtgtctgtgt-agtgtttcataggttttatatggttagtggaatttgtaatgcgt |
588 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||| | |
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| T |
26418574 |
ccatttcttaaaataaattattatcagtgtcga-------gtgttgtgtctgtgtcagtgtttcattggtttgatatggttactggaatttgtaatgcat |
26418482 |
T |
|
| Q |
589 |
gctaaagggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtaccagtggttgtttggtt |
688 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26418481 |
gctaaagggtcagtggcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaagttaggtaccagtggttgtttggtt |
26418382 |
T |
|
| Q |
689 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggttgatgatgt |
773 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26418381 |
tgtcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtttatgatgt |
26418297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 44 - 401
Target Start/End: Complemental strand, 26421151 - 26420795
Alignment:
| Q |
44 |
aacaacaacaataaaaatcaagaacaaaattagcgtttcaaccacggatcaaaaggtttcccatttccactctaaatcaacttctattgttttgatcttt |
143 |
Q |
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| T |
26421151 |
aacaacaacaacacaaatca-gaacaaaattagcgtttcaaccacggatcaaaaggtttcccatttccacttcaaatcaacttctattgttttgatcttt |
26421053 |
T |
|
| Q |
144 |
gtgctgtgtaaatctatggtagtttatgtgatttttacttaattagggtttgaatcaacttgctatctaggttcatgcttcatgtaaacattgattttag |
243 |
Q |
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|||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26421052 |
gtgctgtggaaatctatggttctttgtgtcatttttacttaattagggtttgaatcaacttgctatctaggttcatgcttcatgtaaacattgattttag |
26420953 |
T |
|
| Q |
244 |
ttgctttgcattttagtgtaaattttaatctgttttggttatagacgagttataaattgatgtgtagaatgtacatttaattaacaaaatggatttgagc |
343 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26420952 |
ttgctttgcattttagtgtaaattttaatatgttttggttatagacgagttataaattgatgtgtcgaatgtacatttaattaacaaaatggatttgagc |
26420853 |
T |
|
| Q |
344 |
ttataatagcatatagtataatttatgggttagtcaatgtgttcataactttgtagtg |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26420852 |
ttataatagcatatagtataatttatgggttagtcaatgtgttcataactttgtagtg |
26420795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 3e-78; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 323 - 765
Target Start/End: Original strand, 27981460 - 27981926
Alignment:
| Q |
323 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
411 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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| T |
27981460 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
27981557 |
T |
|
| Q |
412 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
511 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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| T |
27981558 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
27981657 |
T |
|
| Q |
512 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
593 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
27981658 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
27981757 |
T |
|
| Q |
594 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
690 |
Q |
| |
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||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
27981758 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
27981857 |
T |
|
| Q |
691 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtt |
765 |
Q |
| |
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|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
27981858 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtt |
27981926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 323 - 765
Target Start/End: Original strand, 28067990 - 28068456
Alignment:
| Q |
323 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa---ctttgtagtgcttgctcaca |
411 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||| ||| | ||| |
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| T |
28067990 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataataactctgtagggct--cacact |
28068087 |
T |
|
| Q |
412 |
ctttttgattgaaggtgtgtctggtgtttaacaagtgtcaatgtctgagaccaacacatgtgattgcattcaattattccatttcttaaaataaattatt |
511 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||| |
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|
| T |
28068088 |
ttttttgatctaaggtgtgtctggtgtctaacacgtgtttgtgtctgagaccgacacatgtgattgcattcaactatcccatttcttcaaataaattatt |
28068187 |
T |
|
| Q |
512 |
atcagtgt-------cgatatgtcagtgttgtgtctg-tgt-agtgt------ttcata---ggttttatatggttagtggaatttgtaatgcgtgctaa |
593 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| ||||| ||||||| |
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| T |
28068188 |
atcagtgttgagtatcgatatgtcagtgttgtgtctggtgtcagtgtcataggttcataataggtttgatatggttagtggagtttctaatgtgtgctaa |
28068287 |
T |
|
| Q |
594 |
agggtcagtagcctgtggtgtcaacgggaatggtgaagaagaggtgttggtttcgagaggatgggtacaggttaggtac---cagtggttgtttggtttg |
690 |
Q |
| |
|
||||| |||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
28068288 |
agggttagtatcctgtggtgtcaacatgaatgatgaacaagaggtgttggtttcaagaggatgggtacaagttaggtactggtggtggttgttttgtttg |
28068387 |
T |
|
| Q |
691 |
tcagcgaaggatcatggaggtggaggtagtgactgtgaaggtctaaggagggttggttggtctcctatcgtggtt |
765 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
28068388 |
tcagtgaaggatgatggaggtg------gtgactgtgaaggtctaaggaggtttggttggtctcctgtggtggtt |
28068456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 27981372 - 27981440
Alignment:
| Q |
172 |
tgatttttacttaattagggtttgaatcaacttgctatctaggttcatgcttcatgtaaacattgattt |
240 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
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| T |
27981372 |
tgatttttacttgattagggtttgaatcaacttactttctaggttcatgcttcatgtaaacattcattt |
27981440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 28067902 - 28067970
Alignment:
| Q |
172 |
tgatttttacttaattagggtttgaatcaacttgctatctaggttcatgcttcatgtaaacattgattt |
240 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
28067902 |
tgatttttacttgattagggtttgaatcaacttactttctaggttcatgcttcatgtaaacattcattt |
28067970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 27991873 - 27991919
Alignment:
| Q |
222 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
268 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27991873 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
27991919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 28078406 - 28078452
Alignment:
| Q |
222 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
268 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28078406 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
28078452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 1745228 - 1745186
Alignment:
| Q |
453 |
tgtctgagaccaacacatgtgattgcattcaattattccattt |
495 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
1745228 |
tgtctgacaccaacacatgtgattccattcaattatgccattt |
1745186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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