View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2337_low_10 (Length: 356)

Name: NF2337_low_10
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2337_low_10
NF2337_low_10
[»] chr4 (22 HSPs)
chr4 (182-340)||(40391670-40391828)
chr4 (182-340)||(40380329-40380487)
chr4 (182-338)||(41054623-41054782)
chr4 (66-178)||(13307881-13307993)
chr4 (61-169)||(44362665-44362773)
chr4 (48-181)||(37496690-37496834)
chr4 (42-106)||(34589721-34589785)
chr4 (131-178)||(39619045-39619092)
chr4 (43-109)||(10634971-10635037)
chr4 (71-114)||(10164861-10164904)
chr4 (131-181)||(5998885-5998935)
chr4 (40-117)||(11797632-11797712)
chr4 (24-150)||(23292957-23293083)
chr4 (76-117)||(12895120-12895161)
chr4 (58-103)||(28663488-28663533)
chr4 (69-117)||(13117436-13117484)
chr4 (62-117)||(21945503-21945558)
chr4 (69-114)||(13484030-13484076)
chr4 (76-150)||(29205458-29205532)
chr4 (48-154)||(56049863-56049968)
chr4 (24-115)||(20633447-20633535)
chr4 (68-104)||(49887762-49887798)
[»] chr6 (22 HSPs)
chr6 (27-175)||(1334626-1334774)
chr6 (24-177)||(26402624-26402779)
chr6 (50-117)||(19369805-19369872)
chr6 (127-181)||(785384-785438)
chr6 (55-113)||(10031563-10031621)
chr6 (68-117)||(6751886-6751935)
chr6 (68-184)||(32225327-32225443)
chr6 (21-117)||(426518-426614)
chr6 (62-117)||(785459-785515)
chr6 (26-154)||(34595098-34595226)
chr6 (20-115)||(5579612-5579707)
chr6 (42-117)||(22745938-22746012)
chr6 (131-181)||(34197185-34197235)
chr6 (24-117)||(16766659-16766752)
chr6 (121-181)||(26178542-26178602)
chr6 (76-119)||(10157998-10158041)
chr6 (76-150)||(28715309-28715383)
chr6 (24-117)||(9107374-9107467)
chr6 (76-153)||(16833322-16833399)
chr6 (62-114)||(20809643-20809695)
chr6 (68-104)||(29959181-29959217)
chr6 (27-91)||(33303624-33303688)
[»] chr2 (15 HSPs)
chr2 (20-181)||(43585945-43586106)
chr2 (49-115)||(13501084-13501150)
chr2 (20-154)||(15972831-15972965)
chr2 (30-117)||(33884019-33884106)
chr2 (31-98)||(39399881-39399948)
chr2 (48-117)||(11223867-11223936)
chr2 (71-114)||(14450802-14450845)
chr2 (30-117)||(24067718-24067805)
chr2 (40-114)||(44984657-44984729)
chr2 (132-181)||(14450707-14450756)
chr2 (72-113)||(24067263-24067304)
chr2 (68-113)||(42665614-42665659)
chr2 (69-117)||(14373431-14373479)
chr2 (54-106)||(17808512-17808564)
chr2 (62-114)||(18512149-18512201)
[»] chr7 (19 HSPs)
chr7 (21-169)||(1885532-1885675)
chr7 (43-181)||(5937361-5937499)
chr7 (61-182)||(25956446-25956564)
chr7 (24-117)||(22801745-22801838)
chr7 (55-114)||(44317293-44317352)
chr7 (54-114)||(2144546-2144604)
chr7 (64-178)||(48963995-48964119)
chr7 (53-113)||(35238192-35238252)
chr7 (47-117)||(36013802-36013873)
chr7 (24-117)||(11061080-11061173)
chr7 (21-117)||(5409840-5409936)
chr7 (62-114)||(9050140-9050192)
chr7 (65-108)||(2143866-2143909)
chr7 (62-117)||(7438706-7438761)
chr7 (40-113)||(36196760-36196831)
chr7 (68-114)||(37820086-37820132)
chr7 (27-84)||(6601690-6601747)
chr7 (49-114)||(10702551-10702615)
chr7 (60-117)||(38134410-38134467)
[»] chr5 (19 HSPs)
chr5 (30-117)||(19167580-19167668)
chr5 (40-115)||(21319951-21320026)
chr5 (41-183)||(7621168-7621315)
chr5 (25-103)||(41558701-41558779)
chr5 (30-117)||(30080505-30080592)
chr5 (38-114)||(38784782-38784858)
chr5 (24-117)||(13287403-13287496)
chr5 (69-117)||(10010561-10010609)
chr5 (40-117)||(20763353-20763432)
chr5 (74-117)||(15294943-15294986)
chr5 (49-115)||(15302512-15302576)
chr5 (63-118)||(24906304-24906359)
chr5 (20-115)||(26205766-26205861)
chr5 (140-180)||(9031879-9031919)
chr5 (31-115)||(20260541-20260624)
chr5 (48-150)||(42893346-42893448)
chr5 (76-117)||(8420041-8420082)
chr5 (24-117)||(21191060-21191153)
chr5 (62-115)||(31084323-31084376)
[»] chr8 (18 HSPs)
chr8 (24-115)||(26915246-26915336)
chr8 (40-114)||(42874500-42874574)
chr8 (40-177)||(34073922-34074058)
chr8 (72-115)||(31119097-31119140)
chr8 (63-113)||(27733848-27733898)
chr8 (24-117)||(22651938-22652031)
chr8 (24-136)||(24413544-24413657)
chr8 (42-114)||(10497823-10497895)
chr8 (20-115)||(44067474-44067569)
chr8 (76-150)||(36450725-36450799)
chr8 (42-115)||(2652319-2652391)
chr8 (40-117)||(18170486-18170563)
chr8 (40-117)||(18634054-18634131)
chr8 (68-117)||(24295141-24295190)
chr8 (76-117)||(31548297-31548338)
chr8 (49-117)||(5307048-5307115)
chr8 (40-136)||(20873047-20873143)
chr8 (61-117)||(25566840-25566896)
[»] scaffold0122 (1 HSPs)
scaffold0122 (51-181)||(10247-10367)
[»] scaffold0314 (1 HSPs)
scaffold0314 (68-177)||(8954-9061)
[»] chr3 (12 HSPs)
chr3 (68-150)||(14338454-14338536)
chr3 (50-106)||(11093558-11093614)
chr3 (83-180)||(34834869-34834965)
chr3 (62-117)||(49179719-49179774)
chr3 (76-150)||(20503479-20503553)
chr3 (20-115)||(24205047-24205142)
chr3 (20-143)||(55401033-55401156)
chr3 (76-142)||(10954966-10955032)
chr3 (21-97)||(3164049-3164125)
chr3 (63-115)||(12704663-12704715)
chr3 (61-117)||(26508109-26508165)
chr3 (48-104)||(41319327-41319383)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-115)||(225274-225369)
[»] scaffold0024 (1 HSPs)
scaffold0024 (25-113)||(18116-18198)
[»] chr1 (13 HSPs)
chr1 (62-111)||(24462280-24462329)
chr1 (47-118)||(40686761-40686832)
chr1 (132-178)||(18950996-18951041)
chr1 (24-117)||(1486713-1486806)
chr1 (49-117)||(38078665-38078733)
chr1 (42-114)||(46748915-46748987)
chr1 (21-117)||(47989457-47989552)
chr1 (72-113)||(18946042-18946083)
chr1 (40-117)||(21378556-21378633)
chr1 (63-115)||(24176820-24176873)
chr1 (48-117)||(24577190-24577259)
chr1 (69-114)||(28170389-28170433)
chr1 (42-109)||(16925593-16925661)
[»] scaffold0652 (1 HSPs)
scaffold0652 (76-154)||(429-507)
[»] scaffold0050 (1 HSPs)
scaffold0050 (62-149)||(70278-70365)
[»] scaffold0223 (1 HSPs)
scaffold0223 (20-114)||(20130-20224)
[»] scaffold0504 (2 HSPs)
scaffold0504 (132-181)||(8642-8691)
scaffold0504 (68-113)||(8705-8750)
[»] scaffold0021 (1 HSPs)
scaffold0021 (24-117)||(130444-130537)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 40391670 - 40391828
Alignment:
Q  182 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcatctccgttcatgaacaa 281  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40391670 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatggacattcatgacattctaggattagcatctctgttcatgaacaa 40391769  T
Q  282 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttat 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40391770 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttat 40391828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 40380329 - 40380487
Alignment:
Q  182 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcatctccgttcatgaacaa 281  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  40380329 cttactatgctaaactttatctttcaaaatttcatctcgtgcatccagagaacatgaacattcatgacattctaggattagcatctctgttcatgaacaa 40380428  T
Q  282 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttat 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40380429 cacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttat 40380487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 338
Target Start/End: Complemental strand, 41054782 - 41054623
Alignment:
Q  182 cttactatgctaaactttatctttcaaaatttcatcttgtgcatccagagaacatggacattcatgacattctaggattagcatctcc-gt--tcatgaa 278  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||  ||||||| |||||||||  |||| ||  ||| |||    
T  41054782 cttactatgctaaattttatctttcaaaatttcagcttgtacatccagagaacaaggacattcgcgacattccaggattagctcctcctgttgtcacgaa 41054683  T
Q  279 caacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactt 338  Q
    ||||| ||||||||||||||||||||| |||  |||| || | |||||||||||||||||    
T  41054682 caacagaagactgctttggaatcacagttgattattttaagtgaagattgtgatgaactt 41054623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 13307881 - 13307993
Alignment:
Q  66 cagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaag 165  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||| |||   ||||||||  |||||| ||||||| ||||  ||||||| ||||||    
T  13307881 cagataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaag 13307980  T
Q  166 tgtccgtgcaaca 178  Q
    |||  ||||||||    
T  13307981 tgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 44362665 - 44362773
Alignment:
Q  61 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 160  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||||||| |||    |||||||  ||| ||||||| | ||||||||||| || |    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatc 44362764  T
Q  161 agaagtgtc 169  Q
    |||||||||    
T  44362765 agaagtgtc 44362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 37496690 - 37496834
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----------tactggacacgatgcgtgtc 136  Q
    ||||| ||||| ||||||| |||||  |||||| ||||||||||||||||| |||||||||||||||||           | | ||||||||  | ||||    
T  37496690 gacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtc 37496789  T
Q  137 ggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||||| |||||| ||||||| || |||||||||||||||||||    
T  37496790 ggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 34589785 - 34589721
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 106  Q
    ||||| ||||||||||||||||||| ||||| | ||||| ||||||||||||||||| |||||||    
T  34589785 gacacggacacggacacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 39619092 - 39619045
Alignment:
Q  131 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 178  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  39619092 cgtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 10634971 - 10635037
Alignment:
Q  43 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaa 109  Q
    |||||||||||| ||| | || || ||||||||||||||||||||||||||||||| || |||||||    
T  10634971 acactgacacgggcacgtcgatactgataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 10164904 - 10164861
Alignment:
Q  71 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtc 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 5998885 - 5998935
Alignment:
Q  131 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||||||||||| |||||||||||||| || ||||||| |||||||||||    
T  5998885 cgtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 11797712 - 11797632
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaa---tgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||| |||||||| |||||  ||||  |||||||||||||||||   |||||||||| || ||||||||||||||||||    
T  11797712 acgacattgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggt 11797632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 23293083 - 23292957
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactgga 123  Q
    |||||||||||| || ||||||| ||||  |||||   ||||||| ||| | ||||||||||| ||||||||||   |||| ||||||||||||   |||    
T  23293083 gacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcgga 23292984  T
Q  124 cacgatgcgtgtcggacaccaggacac 150  Q
    |||||  |||||| |||||| ||||||    
T  23292983 cacgacacgtgtccgacaccgggacac 23292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 12895161 - 12895120
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  12895161 tttgaaaaaatcacataattcaaagtaattacaagtgtcggt 12895120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 28663488 - 28663533
Alignment:
Q  58 cattgacacagataaaattttgaaaaaatgacataattcaaagtaa 103  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  28663488 cattgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 13117436 - 13117484
Alignment:
Q  69 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||| || ||||||||| ||||||| ||||||||||||||||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggt 13117484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 21945503 - 21945558
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| ||| | ||||||||||||||||||||||  ||||| ||||||||||||    
T  21945503 gacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 13484030 - 13484076
Alignment:
Q  69 ataaaattttgaaaaaatgacataattcaaa-gtaatcacaagtgtc 114  Q
    |||||||||||| ||||| |||||||||||| |||||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgtc 13484076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 29205458 - 29205532
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  29205458 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 56049863 - 56049968
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 147  Q
    ||||||||||||| ||||| ||||| | |||| | |||||||||| ||||| ||||||| | ||||||||    |||| ||| ||| || ||||||||||    
T  56049863 gacacggacacatcgacaccgataataatttg-agaaatgacatagttcaatgtaatcatatgtgtcggtgtcagacatgatacgtatccgacaccagga 56049961  T
Q  148 cacacct 154  Q
    |||||||    
T  56049962 cacacct 56049968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 20633447 - 20633535
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    ||||||||||||||| |||| || ||||| ||||| | ||||| | ||| | |||||||||   ||||||||||| ||||| ||||||||||    
T  20633447 gacacggacaccagacacgatacggacactgacacgtcgacaccgctaataatttgaaaaa---acataattcaatgtaattacaagtgtcg 20633535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 49887762 - 49887798
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaat 104  Q
    |||||||||||||| |||||||||||||||| |||||    
T  49887762 gataaaattttgaagaaatgacataattcaatgtaat 49887798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 1334626 - 1334774
Alignment:
Q  27 acggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacac 126  Q
    ||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||   | ||||    
T  1334626 acggacaccggacacgacactgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacac 1334725  T
Q  127 gatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgca 175  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1334726 gatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 26402779 - 26402624
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaa--tgacataattcaaagtaatcacaagtgtcggtactg 121  Q
    |||||||||||| || | ||||||||||| |||| || ||||  ||||||||||||||||||  ||||||||||||  ||||||||||||||||||   |    
T  26402779 gacacggacaccggacatgacactgacacagacagatcgacaatgataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcg 26402680  T
Q  122 gacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaac 177  Q
    |||||||| | ||| |||||||  |||||  |||||| ||||||||||||||||||    
T  26402679 gacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 19369805 - 19369872
Alignment:
Q  50 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  19369805 cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 19369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 785438 - 785384
Alignment:
Q  127 gatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  785438 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 10031563 - 10031621
Alignment:
Q  55 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10031563 acacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 6751935 - 6751886
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  6751935 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggt 6751886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 32225443 - 32225327
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtg 167  Q
    ||||||||||||| ||||| || | | |||| ||||||||| ||||||||   ||||||||  | ||||||||||| |||||||||||||| ||| ||||    
T  32225443 gataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtg 32225344  T
Q  168 tccgtgcaacagagctt 184  Q
    |  ||||| ||||||||    
T  32225343 tttgtgcagcagagctt 32225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 426614 - 426518
Alignment:
Q  21 acagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||| ||| || ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||| || ||||| ||||||||||||    
T  426614 acagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggt 426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 785515 - 785459
Alignment:
Q  62 gacacagataaaattttgaaaa-aatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  785515 gacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggt 785459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 34595098 - 34595226
Alignment:
Q  26 cacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggaca 125  Q
    |||||||||| || ||||||| ||||  |||||   ||||||  ||| | ||||||||||| ||||||||||  ||||| ||||||||||||   |||||    
T  34595098 cacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggaca 34595197  T
Q  126 cgatgcgtgtcggacaccaggacacacct 154  Q
    |||  |||||| |||||| ||||||||||    
T  34595198 cgacacgtgtctgacaccgggacacacct 34595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 5579612 - 5579707
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    ||||||||| || ||  |||||||  |||||||| | || | ||||| ||||||||||||| ||||||||||| ||||| ||| ||||||||||||    
T  5579612 cacagacacagatactggatacgatgctgacacgaatacgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 22745938 - 22746012
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||| |||| ||||||| ||||| ||||||||||||| ||||||  ||| ||||| ||||||||||||||||||    
T  22745938 gacactcacactgacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggt 22746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 34197185 - 34197235
Alignment:
Q  131 cgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||||| ||||    
T  34197185 cgtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagag 34197235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 16766659 - 16766752
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||| || ||||||  ||||| |||||   ||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  16766659 gacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 16766752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 26178542 - 26178602
Alignment:
Q  121 ggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||||||  ||||||||||| | ||||| |||||||| |||||||||||||||| |||||    
T  26178542 ggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 10157998 - 10158041
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 119  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcggtac 10158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 28715309 - 28715383
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    ||||||||||||||||||||||  ||||| ||||||||||||   ||||||||  |||||  |||||| ||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacac 28715383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 9107467 - 9107374
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||| || ||||||| |||||  ||||   ||||||| ||| | ||||||||||| ||| ||||||  ||||| ||||||||||||    
T  9107467 gacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggt 9107374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 16833322 - 16833399
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacc 153  Q
    ||||||||||| ||||| ||||  ||||| ||||||||||||  | |||||||  || ||| ||||||||||||||||    
T  16833322 tttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacacc 16833399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 20809643 - 20809695
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||| ||||||||||||||||| | |||||||  || |||||||||||||||    
T  20809643 gacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgtc 20809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 29959181 - 29959217
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaat 104  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  29959181 gataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 33303624 - 33303688
Alignment:
Q  27 acggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacat 91  Q
    |||||||||||| |||| || ||||| ||||||| |||||  |||| | ||||||||||||||||    
T  33303624 acggacaccagacacgatacggacactgacacatcgacactaataataatttgaaaaaatgacat 33303688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 43586106 - 43585945
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 119  Q
    |||| ||| ||||||| || |||  |||||||| ||||| |  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||      
T  43586106 cacatacatggacaccggacacggtactgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 43586007  T
Q  120 tggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
     ||||||||| |||||| |||||  |||||||||||||| ||||||||| ||||||||||||    
T  43586006 cggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 13501150 - 13501084
Alignment:
Q  49 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||||| ||| | ||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  13501150 acacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 15972831 - 15972965
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 119  Q
    ||||||||| ||||||||||||||||| ||||| |||||   ||||||  ||| | ||||||||||| ||| ||||||  ||||| ||||||||||||      
T  15972831 cacagacacagacaccagatacgacacggacactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgt 15972930  T
Q  120 tggacacgatgcgtgtcggacaccaggacacacct 154  Q
     ||||||||  |||||| ||| || ||||||||||    
T  15972931 cggacacgacacgtgtccgacgccgggacacacct 15972965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 33884019 - 33884106
Alignment:
Q  30 gacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||| |||| ||| ||||||||| ||||||| || || ||||||||| ||| |||||||||| |||||  ||||| ||||||||||||    
T  33884019 gacatcagacacggcactgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggt 33884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 39399881 - 39399948
Alignment:
Q  31 acaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaa 98  Q
    |||||||| ||||||  ||||| ||||||||||||| ||| ||||||| | |||||||||||||||||    
T  39399881 acaccagacacgacatggacactgacacattgacaccgatgaaatttttagaaaatgacataattcaa 39399948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 11223936 - 11223867
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| |||||  |||||||| ||| ||||||||||||| ||||||||||  ||||| ||||||||||||    
T  11223936 gacacagacacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggt 11223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 14450845 - 14450802
Alignment:
Q  71 aaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgtc 14450802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 24067718 - 24067805
Alignment:
Q  30 gacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| ||| |||||| ||| | ||||||||||| |  | ||||||||||| |||||| ||||||| || | ||||||||||||||||    
T  24067718 gacactagacacgacattgataaggacacattgatatcggtaaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggt 24067805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 44984729 - 44984657
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||||||||  |||| | |||||  || ||||||||||||||||| ||||||||| || ||||||||||||    
T  44984729 acgacactgacac--acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgtc 44984657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 14450756 - 14450707
Alignment:
Q  132 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||| |||||| ||||||  |||||| ||||||||||||||||||||||    
T  14450756 gtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagag 14450707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  72 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 42665614 - 42665659
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||    
T  42665614 gataaaattttgaaaagatgacatgattcaatgtaatcacatgtgt 42665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 14373479 - 14373431
Alignment:
Q  69 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||||   ||||||||||||||| ||||||||| ||||||||    
T  14373479 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggt 14373431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 17808564 - 17808512
Alignment:
Q  54 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 106  Q
    ||||| ||||||||||||||| ||||| | ||||| ||||||||| |||||||    
T  17808564 gacacgttgacacagataaaaatttgatagaatgatataattcaatgtaatca 17808512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||| ||||||||||||| ||||| | ||||||||| ||||||||| |||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 1885532 - 1885675
Alignment:
Q  21 acagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtact 120  Q
    ||||||||||||||| || |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||       
T  1885532 acagacacggacaccggacacgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggt--- 1885628  T
Q  121 ggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtc 169  Q
     | |  | || ||||||||||||||||||||| ||||| ||||||||||    
T  1885629 -gtcgtgttg-gtgtcggacaccaggacacacgttcaatcagaagtgtc 1885675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 5937499 - 5937361
Alignment:
Q  43 acactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 142  Q
    |||||||||| ||||| |  |||| ||||||||||||| ||||||||||||||||| ||||||||||||||| ||   || |||||| | ||||||||||    
T  5937499 acactgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacac 5937400  T
Q  143 caggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||| | || |||||||   ||||||||||||||| ||||    
T  5937399 cagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 25956446 - 25956564
Alignment:
Q  61 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaacc 160  Q
    ||||||| |||||||| ||||||  ||||||||||||| ||||||||||||||||||   ||||||||| | ||||||||| | |||||| ||||||| |    
T  25956446 tgacacaaataaaattgtgaaaa--tgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatc 25956542  T
Q  161 agaagtgtccgtgcaacagagc 182  Q
    |||||||||||||||| |||||    
T  25956543 agaagtgtccgtgcaatagagc 25956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 22801838 - 22801745
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| |||||| || |||||||| |||||||||| |  |||| ||| ||||||||| | ||||||||||||||  ||||||||||||||||||    
T  22801838 gacacagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggt 22801745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 44317352 - 44317293
Alignment:
Q  55 acacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  44317352 acacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgtc 44317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 2144604 - 2144546
Alignment:
Q  54 gacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||| |||||    
T  2144604 gacacattgacaca--taaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 48964119 - 48963995
Alignment:
Q  64 cacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac----------tggacacgatgcgtgtcggacaccaggacacacc 153  Q
    ||||||||||||| ||| |||||||||||||||||  ||||||||||||| |||            |||||||||| ||||||| ||||| ||||| |||    
T  48964119 cacagataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtaagtgtggacacgatacgtgtcgaacaccgggacatacc 48964020  T
Q  154 ttcaaccagaagtgtccgtgcaaca 178  Q
    ||||| ||||||||||| |||||||    
T  48964019 ttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 35238252 - 35238192
Alignment:
Q  53 ggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||  |||||||| ||||    
T  35238252 ggacacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 36013873 - 36013802
Alignment:
Q  47 tgacacggacacattgacacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||| ||||||||||||  ||||| | ||||| |||||||||||||||||| ||||||||| ||||||||    
T  36013873 tgacactgacacattgacaatgataataatttgagaaaaatgacataattcaatgtaatcacacgtgtcggt 36013802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 11061173 - 11061080
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||| | |||||||||| ||||| ||||||  ||||||| ||| | ||||||||||| |||||||| |   |||| ||||||||||||    
T  11061173 gacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggt 11061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 5409936 - 5409840
Alignment:
Q  21 acagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||| |||||| |||||||||  ||||| |||||  ||| |||| ||| | ||||||||||| ||||||||||  | ||| ||||||||||||    
T  5409936 acagacacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaattacaagtgtcggt 5409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 9050192 - 9050140
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||| |||||||||||||||||||||||||| |||||  |||||||| |||||    
T  9050192 gacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtc 9050140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2143909 - 2143866
Alignment:
Q  65 acagataaaattttgaaaaaatgacataattcaaagtaatcaca 108  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||    
T  2143909 acagattaaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 7438706 - 7438761
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  7438706 gacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 7438761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 36196760 - 36196831
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    ||||| ||||||||||| | ||||||||  ||||||||||| ||||  |||||||||||  |||||||||||||    
T  36196760 acgaccctgacacggacgcgttgacaca--taaaattttgagaaaacaacataattcaacataatcacaagtgt 36196831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 37820086 - 37820132
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||||||||||||||||| |||||||| || |||||| ||||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgtc 37820132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 6601690 - 6601747
Alignment:
Q  27 acggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaa 84  Q
    ||||||||| ||||||||||||||| ||| || ||||||  ||||||| |||||||||    
T  6601690 acggacaccggatacgacactgacatggatacgttgacaacgataaaagtttgaaaaa 6601747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 10702615 - 10702551
Alignment:
Q  49 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||||||| || || ||||||||||||| |||||||||| |||||| ||||| | |||||||    
T  10702615 acacggacacatcgatactgataaaattttgagaaaatgacat-attcaatgtaattataagtgtc 10702551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 38134467 - 38134410
Alignment:
Q  60 ttgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||    
T  38134467 ttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 19167668 - 19167580
Alignment:
Q  30 gacaccagatacgacactgacacggacacattgacacagataaaattttgaa-aaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||| ||||||||||||| ||||| ||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  19167668 gacaccagacacgacactgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggt 19167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 21320026 - 21319951
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21320026 acgacactgatatggacacattgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtcg 21319951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 7621315 - 7621168
Alignment:
Q  41 cgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcgg-----tactggacacgatgcgtgt 135  Q
    ||||||||||| |||||| | ||||||||||||||||  ||||| |||||||||| || |||||||||||| ||||     ||   |||||||| | | |    
T  7621315 cgacactgacatggacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttat 7621216  T
Q  136 cggacaccaggacacaccttcaaccagaagtgtccgtgcaacagagct 183  Q
    |||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  7621215 cggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagct 7621168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 41558779 - 41558701
Alignment:
Q  25 acacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaa 103  Q
    ||||||||||| |||||||||| ||||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||    
T  41558779 acacggacaccggatacgacacggacactgacacattgacacaaataataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 30080592 - 30080505
Alignment:
Q  30 gacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||| |||||| ||||||||| |  | ||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  30080592 gacaccagacacgacaatgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggt 30080505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 38784782 - 38784858
Alignment:
Q  38 atacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||||| ||||  |||||| | ||| ||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  38784782 atacgacactaacactaacacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 13287496 - 13287403
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||| || ||||||| |||||  |||| | ||||||||||| | ||||||||||| ||||||||||  ||||  ||||||||||||    
T  13287496 gacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggt 13287403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 10010561 - 10010609
Alignment:
Q  69 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggt 10010609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 20763353 - 20763432
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatg--acataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||||  |||||||||||| |||||  |||| |||||| |  ||||||||||| ||||||||||||||||||    
T  20763353 acgacactgacacaaacacattgacaccgataatttttttaaaaaaagttacataattcaacgtaatcacaagtgtcggt 20763432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 15294943 - 15294986
Alignment:
Q  74 attttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  15294943 attttgaaaaaatgacataattcaaggtaatcacaagtgccggt 15294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 15302512 - 15302576
Alignment:
Q  49 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||| ||||||| ||||  ||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  15302512 acacagacacatcgacaacgataaaattttgaaaaaatgac--aattcaaggtaatcacaagtgtcg 15302576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 24906359 - 24906304
Alignment:
Q  63 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 118  Q
    |||||||||| | ||||||||||||||||||||||  ||||| |||||||||||||    
T  24906359 acacagataataatttgaaaaaatgacataattcagtgtaattacaagtgtcggta 24906304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 26205861 - 26205766
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||||||||| || | ||||  ||||| ||||| | || || ||||||||||||| ||||||||||||||||  ||||||| | ||||||    
T  26205861 cacagacacggacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  140 caccaggacacaccttcaaccagaagtgtccgtgcaacaga 180  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 20260624 - 20260541
Alignment:
Q  31 acaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||| || ||||| ||| | |||| | ||||| ||||||||||| |||||| |||||||||||||||| | ||||||||||    
T  20260624 acaccagacacaacactaacaagaacacgtcgacaccgataaaattttaaaaaaa-gacataattcaaagtatttacaagtgtcg 20260541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 42893346 - 42893448
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccagga 147  Q
    ||||||||||||  ||||||| ||| | ||||||||||| ||||||| ||  ||||| ||||||||||||    ||||| |  |||||| ||||||||||    
T  42893346 gacacggacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccagga 42893445  T
Q  148 cac 150  Q
    |||    
T  42893446 cac 42893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 8420041 - 8420082
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  8420041 tttgaaaaaataacataattcaatgtaattacaagtgtcggt 8420082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 21191153 - 21191060
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| |||||| || ||||||| ||||| ||||    ||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  21191153 gacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 21191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 31084323 - 31084376
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  31084323 gacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcg 31084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 26915336 - 26915246
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||||| || ||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||    
T  26915336 gacacggacacc-gaaacgacactgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 42874500 - 42874574
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||| |||||||||| | ||||| | ||| ||||||| ||||||||||||||||| |||||||||||||||    
T  42874500 acgacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 34074058 - 34073922
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcgga 139  Q
    |||||||||| ||| |||||  ||||| |||||||||||||||||||||||||||| || ||||||| |||||||| ||   ||||||   ||||||| |    
T  34074058 acgacactgatacgaacacac-gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcgatatcagacacgtcacgtgtcgca 34073960  T
Q  140 caccaggacacaccttcaaccagaagtgtccgtgcaac 177  Q
    || || ||||| ||||||| || ||||||  |||||||    
T  34073959 catcatgacacgccttcaatcaaaagtgtttgtgcaac 34073922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  72 aaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  63 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 22651938 - 22652031
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| |||||| || ||||||| ||||| |||||   ||||||| ||| | ||||||||||| |||||||||||  |||| ||||||||||||    
T  22651938 gacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggt 22652031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 24413657 - 24413544
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataa-aattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactgg 122  Q
    ||||||||||||||| ||||||| ||||| |||| | |||||| | ||| |||||||| ||||  ||||||||||  ||||| | ||||||| ||   ||    
T  24413657 gacacggacaccagacacgacacggacactgacatactgacaccgttaataattttgagaaaaatacataattcagggtaattataagtgtcagtgtcgg 24413558  T
Q  123 acacgatgcgtgtc 136  Q
    ||||||||||||||    
T  24413557 acacgatgcgtgtc 24413544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 10497895 - 10497823
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||||||||| |||||   ||||| ||||||||||||| ||||| ||||||||  | |||||||||||||||    
T  10497895 gacactgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtc 10497823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 44067474 - 44067569
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    ||||||||||||||||||| || |||| ||||| |||||   ||||| ||||| | ||||| ||||||||||||| ||  ||||| | ||||||||    
T  44067474 cacagacacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 44067569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 36450799 - 36450725
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    ||||||||||| ||| ||||||  ||||| |||||||| |||   |||||||| ||||||| |||||||||||||    
T  36450799 tttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacac 36450725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 2652319 - 2652391
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||| ||||||| |||| ||| | |||||| |||| | |||||||||||||| || ||||||||||||||||    
T  2652319 gacactaacacggatacatcgaccctgataaattttttagaaaatgacataatt-aatgtaatcacaagtgtcg 2652391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 18170563 - 18170486
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18170563 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18170486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 18634131 - 18634054
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| ||||| |||||   ||||||  ||||| ||||||||||| ||||||||||| ||||| |||| |||||||    
T  18634131 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggt 18634054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 24295190 - 24295141
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||| ||| ||||||||| |||| || ||||||||||||||||||    
T  24295190 gataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggt 24295141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 31548338 - 31548297
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||    
T  31548338 tttgataaaatgacataattcaatgtaatcacatgtgtcggt 31548297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 5307048 - 5307115
Alignment:
Q  49 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||| | ||||| ||||| | |||||||| |||||||||||||| | ||||| ||||||||||    
T  5307048 acacggacacgtcgacactgataataatttgaaaa-atgacataattcaatgaaatcataagtgtcggt 5307115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 20873047 - 20873143
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtc 136  Q
    ||||||| ||||| |||||   |||| |||||| | ||||||||||| |||||||| |  ||||| ||||||||||||   ||||||||| ||||||    
T  20873047 acgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgtc 20873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 25566840 - 25566896
Alignment:
Q  61 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  25566840 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 25566896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 10367 - 10247
Alignment:
Q  51 acggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||  ||        ||| |||   |||| |||||||||||||||| ||||||||    
T  10367 acggacacattgacacagataaaattttgacaaaatgacattattcaa--ta--------tgttggtgtcggacgcgatgcgtgtcggacagcaggacac 10278  T
Q  151 accttcaaccagaagtgtccgtgcaacagag 181  Q
    |||||||| |||||||||| |||||| ||||    
T  10277 accttcaatcagaagtgtctgtgcaagagag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 8954 - 9061
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacg--atgcgtgtcggacaccaggacacaccttcaaccagaag 165  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||    | || |   || |||||||||||| |||||| ||||||| ||||||    
T  8954 gataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggt----gtcatgtcgtgtgtgtcggacaccgggacacgccttcaatcagaag 9049  T
Q  166 tgtccgtgcaac 177  Q
    |||| |||||||    
T  9050 tgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 14338536 - 14338454
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||    |||||||  ||| ||||||||| ||||||    
T  14338536 gataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 11093558 - 11093614
Alignment:
Q  50 cacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatca 106  Q
    |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||    
T  11093558 cacggacacatttacactgataataatttgaaaaaatgacataattcaaagtaatca 11093614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 34834965 - 34834869
Alignment:
Q  83 aaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacaga 180  Q
    ||||||||||||||||  ||||||| ||| |||||   ||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||||||||||    
T  34834965 aaatgacataattcaat-taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 49179774 - 49179719
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||| ||||||||||||| ||| ||||||||||| | ||||||||||||||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggt 49179719  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 20503479 - 20503553
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacac 150  Q
    ||||||||||||||||||||||  ||||| ||||||||||||  |||||||||  | |||| |||||| ||||||    
T  20503479 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacac 20503553  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 24205142 - 24205047
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||||||||| || ||||||| ||||| |||||   ||||| ||||| | ||||| ||||||||||||| ||  ||||| | ||||||||    
T  24205142 cacagacacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcg 24205047  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 55401033 - 55401156
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtac 119  Q
    |||||| ||||||||| |||||||||| ||||| || ||   ||||||  ||| | ||||||||||| |||||||| |  ||||| ||||||||||||      
T  55401033 cacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgt 55401132  T
Q  120 tggacacgatgcgtgtcggacacc 143  Q
     ||||||||  |||||| ||||||    
T  55401133 cggacacgacacgtgtccgacacc 55401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 10954966 - 10955032
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacac 142  Q
    ||||||||||| ||||||||||  ||||||||||||||||||   ||||||||  |||||| |||||    
T  10954966 tttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3164125 - 3164049
Alignment:
Q  21 acagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattca 97  Q
    ||||||||||||||| || ||||||| ||||  | ||| | ||||||| ||| | ||||||||||| ||||||||||    
T  3164125 acagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattca 3164049  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 12704715 - 12704663
Alignment:
Q  63 acacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||| ||||| | ||||||||||||||||||||||| ||||||| | ||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcg 12704663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 26508109 - 26508165
Alignment:
Q  61 tgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  26508109 tgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 26508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 41319383 - 41319327
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaat 104  Q
    ||||||||||| | |||||  |||| | ||||||||||||||||||||||| |||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 225369 - 225274
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||||||||||||||| || ||||||| ||||| |||||   ||||||||||| | ||||| ||||||||||||| ||| ||||| | ||||||||    
T  225369 cacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcg 225274  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 18198 - 18116
Alignment:
Q  25 acacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    |||||||||||||| ||||||||||||||      | ||||| ||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  18198 acacggacaccagacacgacactgacacg------tcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 24462329 - 24462280
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagt 111  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  24462329 gacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 40686832 - 40686761
Alignment:
Q  47 tgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggta 118  Q
    |||||| ||||| | ||||  ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||    
T  40686832 tgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgtcggta 40686761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  132 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaaca 178  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 1486806 - 1486713
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||| ||| |||||||||| || || |||||  |||||||| ||| | ||||||||||| ||||||||||  ||||| | ||||||||||    
T  1486806 gacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggt 1486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 38078733 - 38078665
Alignment:
Q  49 acacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||| ||||| | ||||||| ||| | ||||||||||| ||||||||||| ||||| ||||||||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggt 38078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 46748987 - 46748915
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||||||||||||||   |||||   |||||||||||||||| |||||| ||||| |||||||||| ||||    
T  46748987 gacactgacacggacacgccgacaccattaaaattttgaaaaaacgacatagttcaatgtaatcacaaatgtc 46748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 47989457 - 47989552
Alignment:
Q  21 acagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||||||| |||||| ||||||| ||||| |||||   |||||| |||| | ||| ||||||| ||||||||||  ||||| ||||||||||||    
T  47989457 acagacacggataccagacacgacacagacactgacacgccgacaca-ataataatttaaaaaaatcacataattcagtgtaattacaagtgtcggt 47989552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  72 aaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    ||||||||| ||||||||||||||||| |||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 21378556 - 21378633
Alignment:
Q  40 acgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    ||||||| |||| |||||||  ||||||| ||| |  |||||||||| ||||||||||  ||||| ||||||||||||    
T  21378556 acgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaattacaagtgtcggt 21378633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 24176820 - 24176873
Alignment:
Q  63 acacagataaaattttga-aaaaatgacataattcaaagtaatcacaagtgtcg 115  Q
    |||| ||||||||||||| ||||||||||| ||| || ||||||||||||||||    
T  24176820 acaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtcg 24176873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 24577259 - 24577190
Alignment:
Q  48 gacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||  |||||||  ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  24577259 gacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 24577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 28170389 - 28170433
Alignment:
Q  69 ataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    ||||||||||||||| |||||||||||||| ||||| |||||||||    
T  28170389 ataaaattttgaaaa-atgacataattcaatgtaataacaagtgtc 28170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16925593 - 16925661
Alignment:
Q  42 gacactgacacggacacattgacacagataaaattttg-aaaaaatgacataattcaaagtaatcacaa 109  Q
    ||||||||||||||||  | || || |||||||||||| ||||||| ||| ||||||| ||||||||||    
T  16925593 gacactgacacggacatgtcgataccgataaaattttgaaaaaaataacacaattcaatgtaatcacaa 16925661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 507 - 429
Alignment:
Q  76 tttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggacacacct 154  Q
    ||||||||||| ||| ||||||  ||||| ||||||||||||   |||||||| ||||||| |||||| ||||||||||    
T  507 tttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacct 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 70278 - 70365
Alignment:
Q  62 gacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggtactggacacgatgcgtgtcggacaccaggaca 149  Q
    ||||||| ||| | ||||||||||| ||||||||||  ||||| | ||||||||||   ||||||||  |||||| ||||||||||||    
T  70278 gacacagttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggaca 70365  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 20130 - 20224
Alignment:
Q  20 cacagacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtc 114  Q
    |||||| ||||||||| || ||||||| ||||  |||||   ||||||| ||| | ||||||||||| ||||||||||  ||||| |||||||||    
T  20130 cacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtc 20224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 8691 - 8642
Alignment:
Q  132 gtgtcggacaccaggacacaccttcaaccagaagtgtccgtgcaacagag 181  Q
    ||||| |||||| |||||  ||||||| ||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagag 8642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 8750 - 8705
Alignment:
Q  68 gataaaattttgaaaaaatgacataattcaaagtaatcacaagtgt 113  Q
    ||||||||||||| |||||||||| |||||| |||| |||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 130444 - 130537
Alignment:
Q  24 gacacggacaccagatacgacactgacacggacacattgacacagataaaattttgaaaaaatgacataattcaaagtaatcacaagtgtcggt 117  Q
    |||||||||||| || ||||||| ||||  ||||    ||||||| ||| | ||||||||||| ||||||||||  ||||| ||||||||||||    
T  130444 gacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaattacaagtgtcggt 130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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