View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_low_15 (Length: 298)
Name: NF2337_low_15
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 37896652 - 37896373
Alignment:
| Q |
1 |
taaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896652 |
taaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccaca |
37896553 |
T |
|
| Q |
101 |
attgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896552 |
attgttatctaaatttgttgtaacttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaa |
37896453 |
T |
|
| Q |
201 |
gagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaac |
280 |
Q |
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| T |
37896452 |
gagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaac |
37896373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 37958550 - 37958829
Alignment:
| Q |
1 |
taaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccaca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37958550 |
taaaagcaactattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgattgtgaagttcaagcgccaca |
37958649 |
T |
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| Q |
101 |
attgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaa |
200 |
Q |
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||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
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| T |
37958650 |
atttttatctaaatttgttgtaacttgtggtttcatttgggctagtatggttaaaacaagatgtagaaaggaaaatgataacgatgatgatgaaaaagag |
37958749 |
T |
|
| Q |
201 |
gagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaac |
280 |
Q |
| |
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||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37958750 |
gagtattttggttttccaggtgattgtagagaaagacttgggtacaaaataccagaggggtattttgggaattgtctaac |
37958829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 37952817 - 37953083
Alignment:
| Q |
6 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaattgt |
105 |
Q |
| |
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|||| ||||||||| | |||||| ||||| ||| | ||||||| ||||| | | ||| ||||||||||||| ||||| ||| | ||||| |||||||| |
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| T |
37952817 |
gcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaatccaagcaccacaatttc |
37952916 |
T |
|
| Q |
106 |
tatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaagagta |
205 |
Q |
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||||||||| |||||||| ||||| ||| ||||| ||||||||||||| ||| |||||| | ||| ||||| || |||||||||||| ||||| |
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| T |
37952917 |
tatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcatagaagt---aatcataat-at--tgatgaaaaagacgagta |
37953010 |
T |
|
| Q |
206 |
ttttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgttta |
278 |
Q |
| |
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|||| |||| |||||||||| ||||| ||||| ||||||| |||||| ||||||||||| ||||| |||||| |
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| T |
37953011 |
tttttgtttcacaggtgattgcagagacagactagggtacacaataccggaggggtatttcggaaactgttta |
37953083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 28166359 - 28166284
Alignment:
| Q |
3 |
aaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
78 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||| | ||||||| || | ||| ||||||||||||||||||| |
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| T |
28166359 |
aaagcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
28166284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 39712434 - 39712171
Alignment:
| Q |
11 |
tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcat---gaagttcaagcgccacaattgtta |
107 |
Q |
| |
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||||| ||||| |||||| ||||||||| | ||||||| ||||| || ||||||||||||||||||||| || ||| | | | |||| |||| || |
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| T |
39712434 |
tattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataataatgaaatcaacgtgccaaaatttata |
39712335 |
T |
|
| Q |
108 |
tctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgata---atgatgatgatgaaaaagaagagt |
204 |
Q |
| |
|
|||||||||||||||| || || ||| ||||| ||||| ||||| || ||| ||| |||||| ||| | ||||||||||||||||||| |||| |
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| T |
39712334 |
tctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagcaatgcataaaaatgatgatggtggtgatgatgatgatgaaaaagatgagt |
39712235 |
T |
|
| Q |
205 |
attttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttgg |
268 |
Q |
| |
|
| ||| |||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
39712234 |
acttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgg |
39712171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 11528050 - 11527783
Alignment:
| Q |
6 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaa---tatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaat |
102 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||| ||||||| |||| || | ||||||||||||||||||||| | ||| | | |||||||||| |
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| T |
11528050 |
gcaattattgtttttggaaaagaagaaattgagaggatgaaaaaaatatgtgc--tgaatcaatggaagaaaaatgataacgaaatcaacgcgccacaat |
11527953 |
T |
|
| Q |
103 |
tgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaaga |
202 |
Q |
| |
|
| |||||||||||||||||| ||||| |||| ||||| ||||| | |||||||| | |||| ||| ||| |||||| || || ||||| || |
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| T |
11527952 |
ttctatctaaatttgttgtaacttgtgctttcgtttgggctagtataactaaaacaatacatag------aaacgatgatgatggcgacgataaagatga |
11527859 |
T |
|
| Q |
203 |
gtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgttta |
278 |
Q |
| |
|
|||||| ||| || ||||||| |||||||||||||| || ||||||||||||||||||||| || |||||| |
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|
| T |
11527858 |
atatttttctttcacatgtgattgcagagatagacttggttatccaataccagaggggtattttgggaactgttta |
11527783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 38757332 - 38757265
Alignment:
| Q |
11 |
tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
78 |
Q |
| |
|
||||||||||| |||||| ||||||||| | ||||||| || ||||| ||||||||||||||||||| |
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|
| T |
38757332 |
tattgtttttgaaaaagaagaaattgaggggatgaaaaaatatgcactgaatcaatggaagaaaaatg |
38757265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 40768307 - 40768235
Alignment:
| Q |
6 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
78 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| | ||||||| || | ||| ||||||||||||||||||| |
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| T |
40768307 |
gcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
40768235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 11149376 - 11149448
Alignment:
| Q |
6 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
78 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| | ||||||| || | || ||||||||||||||||||| |
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| T |
11149376 |
gcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtgctgaatcaatggaagaaaaatg |
11149448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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