View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_low_16 (Length: 262)
Name: NF2337_low_16
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 51845813 - 51846046
Alignment:
| Q |
20 |
ttgctgctggcagaggaccctgaaaagattccaaggaagaatgaaattaatacaaaggataagcatatctcattccagtgtgatgaaagcatggatgcag |
119 |
Q |
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| T |
51845813 |
ttgctgctggcagaggaccctgaaaagattccaaggaagaatgaaattaatacaaaggataagcatatctcattccagtgtgatgaaagcatggatgcag |
51845912 |
T |
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| Q |
120 |
tagagaaatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatgg |
219 |
Q |
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| T |
51845913 |
tagagaaatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatgg |
51846012 |
T |
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| Q |
220 |
attcatgattgagatatgcaattgtgatagtctc |
253 |
Q |
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| T |
51846013 |
attcatgattgagatatgcaattgtgatagtctc |
51846046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 44555601 - 44555444
Alignment:
| Q |
95 |
cagtgtgatgaaagcatggatgcagtagagaaatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatc |
194 |
Q |
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| T |
44555601 |
cagtgtgatgaaagcatggatacagtagaaaaatatctgaatgataagaaaattggctgtaaacgtgcaatggtggaagaaaatggaattcaagtggatc |
44555502 |
T |
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| Q |
195 |
agttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtct |
252 |
Q |
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| T |
44555501 |
aattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtct |
44555444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 44544959 - 44544801
Alignment:
| Q |
95 |
cagtgtgatgaaagcatggatgcagtagagaaatatttgaaggatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatc |
194 |
Q |
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| T |
44544959 |
cagtgtgatggaagcattgatgcagtagagaaatatctgaatgataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagtggatc |
44544860 |
T |
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| Q |
195 |
agttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtctc |
253 |
Q |
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| T |
44544859 |
aattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctc |
44544801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 44546228 - 44546149
Alignment:
| Q |
18 |
acttgctgctggcagaggaccctgaaaagattccaaggaagaatgaaattaatacaaaggataagcatatctcattccag |
97 |
Q |
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| T |
44546228 |
acttgctgaaggcagaagaccctgaaaaaattccaaggaagaaggaaattaatacaaaggataatcatatctcattccag |
44546149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 44555843 - 44555768
Alignment:
| Q |
18 |
acttgctgctggcagaggaccctgaaaagattccaaggaagaatgaaattaatacaaaggataagcatatctcatt |
93 |
Q |
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| T |
44555843 |
acttgctacaggcagaagaccctgaaaatattccaaggaagaacgaaattaatccaaaggataatcatatatcatt |
44555768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 2573258 - 2573324
Alignment:
| Q |
186 |
aagtggatcagttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtct |
252 |
Q |
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| T |
2573258 |
aagtagatcagctatttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtct |
2573324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 46952839 - 46952763
Alignment:
| Q |
170 |
gaggaaaatggaattcaagtggatcagttgttttttcatgacccagatggattcatgattgagatatgcaattgtga |
246 |
Q |
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| T |
46952839 |
gaggaaaatggaatctacgttgatcagttgttcttccatgatccagatggcaccatgattgaaatctgcaattgtga |
46952763 |
T |
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