View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_low_22 (Length: 237)
Name: NF2337_low_22
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19158219 - 19157999
Alignment:
| Q |
1 |
tggaaaaaagtgagagtatttttgttgcaactgaaagaaagaacatgaatcaagccaaacacaaggggaaaggacaaataccagctcaaggtggaattaa |
100 |
Q |
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| T |
19158219 |
tggaaaaaagtgagagtgtttttgttgcaactgaaagaaagaatatgaatcaagcgaaacataaggggaaaggcaaaataccacctcaaggtggaattaa |
19158120 |
T |
|
| Q |
101 |
gaaagaatccaaatgtttattttgtaaaaagaaagcacacatgaagaaggatttccccaagtttcagaaatgacttgaaaataaaggtaaatgattctca |
200 |
Q |
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| T |
19158119 |
gaaagaatccaagtgtttcttttgtaaaaagaagggacacatgaagaaggattgccccaagtttcagaaatggcttgaaaacaaaggtaaatcaatctca |
19158020 |
T |
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| Q |
201 |
cttgtctgttatgagtataat |
221 |
Q |
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|||||||||||||||| |||| |
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| T |
19158019 |
cttgtctgttatgagtctaat |
19157999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18476946 - 18477166
Alignment:
| Q |
1 |
tggaaaaaagtgagagtatttttgttgcaactgaaagaaagaacatgaatcaagccaaacacaaggggaaaggacaaataccagctcaaggtggaattaa |
100 |
Q |
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| T |
18476946 |
tggaaaaaagtgagagtgtttttgttgcaactgaaagaaagaacatgaatcaagcgaaacataaggggaaaggcaaaataccacctcaaggtggaattaa |
18477045 |
T |
|
| Q |
101 |
gaaagaatccaaatgtttattttgtaaaaagaaagcacacatgaagaaggatttccccaagtttcagaaatgacttgaaaataaaggtaaatgattctca |
200 |
Q |
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| T |
18477046 |
gaaagaatacaagtgtttcttttctaaaaagaagggacacatgaagaaggattgccccaagtttcagaaatggcttgaaaacaaaggtaaatcaatctca |
18477145 |
T |
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| Q |
201 |
cttgtctgttatgagtataat |
221 |
Q |
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| T |
18477146 |
cttgtctgttatgagtctaat |
18477166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 7452715 - 7452922
Alignment:
| Q |
14 |
gagtatttttgttgcaactgaaagaaagaacatgaatcaagccaaacacaaggggaaaggacaaataccagctcaaggtggaattaagaaagaatccaaa |
113 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
7452715 |
gagtgtttttgttgtaactgaaagaaagaacatgaatcaagcgaaacaaaaggggaaaggcaaaataccacctcaaggtggaattaagaaagaatccaag |
7452814 |
T |
|
| Q |
114 |
tgtttattttgtaaaaagaaagcacacatgaagaaggatttccccaagtttcagaaatgacttgaaaataaaggtaaatgattctcacttgtctgttatg |
213 |
Q |
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| T |
7452815 |
tgtttcttttgtaaaaagaagggacacatgaagaagtattgccccaagtttcagaaatggcttgaaaacaaaggtaaatcaatctcacttgtctgttatg |
7452914 |
T |
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| Q |
214 |
agtataat |
221 |
Q |
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||| |||| |
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| T |
7452915 |
agtctaat |
7452922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 773683 - 773642
Alignment:
| Q |
166 |
agaaatgacttgaaaataaaggtaaatgattctcacttgtct |
207 |
Q |
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| T |
773683 |
agaaatgacttgaaaataaaggtaaatcaatctcatttgtct |
773642 |
T |
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