View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2337_low_24 (Length: 222)
Name: NF2337_low_24
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 29683696 - 29683876
Alignment:
| Q |
19 |
gaataacaaaaattgagaacacagggaagaatttcgtcgttctacttatgcttatcatggacaagagcatctaagtcaaagtctcatgcttaactcaaca |
118 |
Q |
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| T |
29683696 |
gaataacaaaaattgagaacacagagaagaatttcgtcgttctacttatgcttatcatggacaagagcatctaagtca--gtcttatgcttaactcaaca |
29683793 |
T |
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| Q |
119 |
aatgtagagcctgaagcaccatctgcagagtttcaatttcaaccaagtcatttggtattttaagcactcaatgctttatcact |
201 |
Q |
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| T |
29683794 |
aatgtagagcctcaagcaccatctgcagagtttcaatttcaaccaagtcatttggtattttaagcactcaatgctttatcact |
29683876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 29720446 - 29720624
Alignment:
| Q |
19 |
gaataacaaaaattgagaacacagggaagaatttcgtcgttctacttatgcttatcatggacaagagcatctaagtcaaagtctcatgcttaactcaaca |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
29720446 |
gaataacaaaaattgagaacacag--aagaatttcgtcgttctacttatgcttatcatggacaagagcatctaagtca--gtcttatgcttaactcaaca |
29720541 |
T |
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| Q |
119 |
aatgtagagcctgaagcaccatctgcagagtttcaatttcaaccaagtcatttggtattttaagcactcaatgctttatcact |
201 |
Q |
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| T |
29720542 |
aatgtagagcctcaagcaccatctgcagagtttcaatttcaaccaagtcatttggtattttaagcactcaatgctttatcact |
29720624 |
T |
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