View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2337_low_26 (Length: 202)
Name: NF2337_low_26
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2337_low_26 |
 | |
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| [»] chr3 (8 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 25085272 - 25085085
Alignment:
| Q |
13 |
aagaaaataacatataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaaca |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25085272 |
aagaaaataacaaataaactaaagagtgtttcttct--gtcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaaca |
25085175 |
T |
|
| Q |
113 |
tccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
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|||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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|
| T |
25085174 |
tccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacct |
25085085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 24982243 - 24982093
Alignment:
| Q |
52 |
tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg |
151 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
24982243 |
tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg |
24982144 |
T |
|
| Q |
152 |
tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
24982143 |
tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacct |
24982093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 24497234 - 24497394
Alignment:
| Q |
42 |
ttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgc |
141 |
Q |
| |
|
||||| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
24497234 |
ttcttgtttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgc |
24497333 |
T |
|
| Q |
142 |
atgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
24497334 |
gtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacct |
24497394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 24923419 - 24923595
Alignment:
| Q |
26 |
ataaactaaagagtgtttcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaa |
125 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| || | |
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|
| T |
24923419 |
ataaactaaagagtgtttcttcttcatattcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtca |
24923518 |
T |
|
| Q |
126 |
cagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
24923519 |
ctgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacct |
24923595 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 31825533 - 31825692
Alignment:
| Q |
43 |
tcttctttgtcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgca |
142 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| || |
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|
| T |
31825533 |
tcttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcg |
31825632 |
T |
|
| Q |
143 |
tgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
31825633 |
tgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacct |
31825692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 24919877 - 24920021
Alignment:
| Q |
58 |
tcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgta |
157 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||| || |||||||||||||| |
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|
| T |
24919877 |
tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc |
24919976 |
T |
|
| Q |
158 |
actgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
24919977 |
acagcatcacgaatgacattctctaagaagatcttcaagacacct |
24920021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 21584582 - 21584722
Alignment:
| Q |
52 |
tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg |
151 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
21584582 |
tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg |
21584681 |
T |
|
| Q |
152 |
tatgtaactgcatcacgaatgacattttccaagaagatctt |
192 |
Q |
| |
|
|| ||||| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
21584682 |
tacgtaaccgcatcacgaatcacattctccaagaaaatctt |
21584722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 14858629 - 14858670
Alignment:
| Q |
48 |
tttgtcttcttcaacctccgaaaccatagagggttcttcctt |
89 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
14858629 |
tttgtcttcttcaaccaccaaaaccgtagagggttcttcctt |
14858670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 10575581 - 10575434
Alignment:
| Q |
55 |
tcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtat |
154 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | || || ||||||||||| || || ||||| |||||||| |||||||||||||| |
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|
| T |
10575581 |
tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa |
10575482 |
T |
|
| Q |
155 |
gtaactgcatcacgaatgacattttccaagaagatcttcaagacacct |
202 |
Q |
| |
|
||||| ||||| | || ||||| ||||||||||||||||| |||||| |
|
|
| T |
10575481 |
gtaacagcatctcttataacattctccaagaagatcttcaacacacct |
10575434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 39954838 - 39954955
Alignment:
| Q |
60 |
aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac |
159 |
Q |
| |
|
|||| |||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
39954838 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
39954937 |
T |
|
| Q |
160 |
tgcatcacgaatgacatt |
177 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
39954938 |
agcatcacgaatcacatt |
39954955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 354547 - 354459
Alignment:
| Q |
107 |
acaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttccaagaagatcttcaa |
195 |
Q |
| |
|
||||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||| ||| |||| | |||||| |||||||| |
|
|
| T |
354547 |
acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaa |
354459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 14261017 - 14261166
Alignment:
| Q |
52 |
tcttcttcaacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtg |
151 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| ||||| |
|
|
| T |
14261017 |
tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta |
14261116 |
T |
|
| Q |
152 |
tatgtaactgcatcacgaatgacattttccaagaagatcttcaagacacc |
201 |
Q |
| |
|
|| ||||| ||||| | || ||||| |||||||| |||||||| ||||| |
|
|
| T |
14261117 |
tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacacc |
14261166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 41027738 - 41027626
Alignment:
| Q |
83 |
cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacattttcca |
182 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
41027738 |
cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca |
41027639 |
T |
|
| Q |
183 |
agaagatcttcaa |
195 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
41027638 |
aaaagatcttcaa |
41027626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 22898725 - 22898607
Alignment:
| Q |
77 |
agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat |
176 |
Q |
| |
|
||||||||||| |||||||| | ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| |||| |
|
|
| T |
22898725 |
agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat |
22898626 |
T |
|
| Q |
177 |
tttccaagaagatcttcaa |
195 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
22898625 |
tctccaaaaatatcttcaa |
22898607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 22950393 - 22950275
Alignment:
| Q |
77 |
agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaactgcatcacgaatgacat |
176 |
Q |
| |
|
||||||||||| |||||||| | ||||| || |||||||| || ||||| |||||||| || || ||||||||||| || || ||||| | ||| |||| |
|
|
| T |
22950393 |
agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat |
22950294 |
T |
|
| Q |
177 |
tttccaagaagatcttcaa |
195 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
22950293 |
tctccaaaaatatcttcaa |
22950275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 53328903 - 53328786
Alignment:
| Q |
60 |
aacctccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctccttgcatgctcagtgtatgtaac |
159 |
Q |
| |
|
|||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| | | |||||||| |||||||| || |
|
|
| T |
53328903 |
aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac |
53328804 |
T |
|
| Q |
160 |
tgcatcacgaatgacatt |
177 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
53328803 |
agcatcacgaatcacatt |
53328786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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