View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2337_low_6 (Length: 434)

Name: NF2337_low_6
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2337_low_6
NF2337_low_6
[»] chr8 (21 HSPs)
chr8 (1-64)||(42295193-42295256)
chr8 (1-60)||(29705364-29705423)
chr8 (1-63)||(29800989-29801051)
chr8 (2-62)||(30912602-30912662)
chr8 (5-65)||(42699254-42699314)
chr8 (1-60)||(11582768-11582827)
chr8 (1-60)||(36743522-36743581)
chr8 (1-63)||(20148759-20148821)
chr8 (1-62)||(26125635-26125696)
chr8 (1-60)||(30660781-30660840)
chr8 (1-64)||(33630032-33630095)
chr8 (1-60)||(45397318-45397377)
chr8 (4-60)||(2166005-2166061)
chr8 (1-60)||(2546998-2547057)
chr8 (1-60)||(5754905-5754964)
chr8 (1-60)||(35181518-35181577)
chr8 (1-60)||(42197474-42197533)
chr8 (1-65)||(34304785-34304849)
chr8 (1-60)||(1375544-1375603)
chr8 (25-60)||(28977148-28977183)
chr8 (10-60)||(37038609-37038659)
[»] chr3 (20 HSPs)
chr3 (1-60)||(42100690-42100749)
chr3 (1-60)||(46941055-46941114)
chr3 (1-65)||(40808862-40808926)
chr3 (1-60)||(45126967-45127026)
chr3 (4-65)||(47191068-47191128)
chr3 (4-60)||(54246190-54246246)
chr3 (3-62)||(1078227-1078286)
chr3 (1-60)||(25413683-25413742)
chr3 (1-60)||(54237098-54237157)
chr3 (1-60)||(24688441-24688500)
chr3 (1-60)||(42394458-42394517)
chr3 (1-62)||(27748563-27748624)
chr3 (1-65)||(53273723-53273787)
chr3 (1-63)||(53581897-53581959)
chr3 (1-60)||(9434126-9434185)
chr3 (5-60)||(25996270-25996325)
chr3 (3-58)||(29558275-29558330)
chr3 (1-60)||(36150132-36150191)
chr3 (1-60)||(40480751-40480810)
chr3 (4-60)||(4190307-4190363)
[»] chr1 (16 HSPs)
chr1 (1-60)||(43571125-43571184)
chr1 (5-60)||(37814780-37814835)
chr1 (1-60)||(5489778-5489837)
chr1 (4-63)||(4401326-4401386)
chr1 (1-65)||(44112674-44112738)
chr1 (1-60)||(750344-750403)
chr1 (1-60)||(24769538-24769597)
chr1 (1-60)||(48499001-48499060)
chr1 (5-63)||(2497605-2497663)
chr1 (5-62)||(7447826-7447882)
chr1 (5-60)||(38335920-38335975)
chr1 (5-60)||(48119630-48119685)
chr1 (1-60)||(50448299-50448358)
chr1 (2-60)||(41065155-41065213)
chr1 (10-60)||(51898603-51898653)
chr1 (11-60)||(35003296-35003345)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-60)||(687-746)
[»] chr6 (16 HSPs)
chr6 (1-60)||(26670048-26670107)
chr6 (2-60)||(26466801-26466859)
chr6 (4-60)||(7273377-7273433)
chr6 (5-60)||(3213402-3213457)
chr6 (1-60)||(9698372-9698431)
chr6 (1-62)||(24204026-24204087)
chr6 (4-65)||(30735979-30736040)
chr6 (5-60)||(21293720-21293775)
chr6 (3-60)||(30014345-30014402)
chr6 (5-65)||(33242400-33242460)
chr6 (1-60)||(7292749-7292808)
chr6 (1-60)||(7367551-7367610)
chr6 (1-60)||(13743260-13743319)
chr6 (1-60)||(13748760-13748819)
chr6 (1-60)||(21279931-21279990)
chr6 (5-62)||(27441542-27441599)
[»] chr5 (11 HSPs)
chr5 (4-62)||(25915029-25915087)
chr5 (3-60)||(33855084-33855141)
chr5 (1-64)||(5256993-5257056)
chr5 (1-65)||(18033979-18034043)
chr5 (1-60)||(2614688-2614747)
chr5 (1-60)||(22512307-22512366)
chr5 (1-60)||(41334702-41334761)
chr5 (1-65)||(33801466-33801530)
chr5 (5-65)||(38470576-38470636)
chr5 (1-60)||(7617135-7617194)
chr5 (1-60)||(32473433-32473492)
[»] chr4 (25 HSPs)
chr4 (4-60)||(1771308-1771364)
chr4 (1-63)||(27893881-27893943)
chr4 (1-69)||(27864557-27864625)
chr4 (1-60)||(28988475-28988534)
chr4 (1-60)||(33703143-33703202)
chr4 (2-65)||(43514726-43514789)
chr4 (1-60)||(55966385-55966444)
chr4 (1-62)||(43949840-43949902)
chr4 (7-60)||(35017735-35017788)
chr4 (1-65)||(25051690-25051754)
chr4 (5-60)||(27316756-27316811)
chr4 (1-60)||(27550311-27550370)
chr4 (1-60)||(48463489-48463548)
chr4 (1-62)||(39631100-39631162)
chr4 (4-60)||(12496958-12497014)
chr4 (1-65)||(28982861-28982925)
chr4 (1-60)||(41878408-41878467)
chr4 (5-63)||(3756289-3756347)
chr4 (1-59)||(23204817-23204875)
chr4 (1-60)||(23035982-23036041)
chr4 (15-62)||(41327596-41327643)
chr4 (1-63)||(31680901-31680963)
chr4 (4-62)||(43735742-43735800)
chr4 (10-60)||(50526091-50526141)
chr4 (4-60)||(41847973-41848029)
[»] chr2 (20 HSPs)
chr2 (1-64)||(33229299-33229363)
chr2 (1-60)||(1750416-1750475)
chr2 (1-60)||(16096749-16096808)
chr2 (1-60)||(12302292-12302351)
chr2 (1-60)||(30838634-30838693)
chr2 (1-63)||(43490440-43490502)
chr2 (1-65)||(43335802-43335866)
chr2 (5-60)||(4764769-4764824)
chr2 (1-60)||(12415499-12415558)
chr2 (1-60)||(12427559-12427618)
chr2 (1-60)||(19047159-19047218)
chr2 (10-60)||(34817824-34817874)
chr2 (1-62)||(11825693-11825754)
chr2 (1-62)||(41282013-41282074)
chr2 (1-60)||(43114559-43114618)
chr2 (5-65)||(966877-966937)
chr2 (1-65)||(16803965-16804029)
chr2 (1-65)||(16843247-16843311)
chr2 (1-60)||(13780774-13780833)
chr2 (27-60)||(42849911-42849944)
[»] chr7 (20 HSPs)
chr7 (1-60)||(35069723-35069782)
chr7 (3-62)||(10573749-10573808)
chr7 (1-60)||(24001051-24001110)
chr7 (1-60)||(42538470-42538529)
chr7 (1-63)||(44326177-44326239)
chr7 (1-53)||(32029856-32029908)
chr7 (1-65)||(43343663-43343727)
chr7 (1-60)||(5810963-5811022)
chr7 (5-63)||(16180400-16180457)
chr7 (1-62)||(44416973-44417034)
chr7 (1-60)||(5015397-5015456)
chr7 (9-60)||(5194278-5194329)
chr7 (1-60)||(42972854-42972913)
chr7 (1-56)||(45326026-45326081)
chr7 (5-65)||(41861671-41861731)
chr7 (1-60)||(40236921-40236980)
chr7 (17-60)||(43317445-43317488)
chr7 (9-60)||(47279744-47279795)
chr7 (5-63)||(4638242-4638300)
chr7 (1-59)||(26898441-26898499)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-60)||(14227-14286)
scaffold0187 (1-60)||(24555-24614)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-60)||(112657-112716)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-65)||(11248-11312)
[»] scaffold0157 (1 HSPs)
scaffold0157 (4-60)||(23463-23519)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-60)||(35495-35554)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-62)||(45762-45819)


Alignment Details
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42295256 - 42295193
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctt 64  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42295256 tccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttctt 42295193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29705423 - 29705364
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  29705423 tccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29800989 - 29801051
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  29800989 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 29801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 30912602 - 30912662
Alignment:
Q  2 ccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30912602 ccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 30912662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 42699314 - 42699254
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  42699314 taatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttctta 42699254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11582827 - 11582768
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  11582827 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36743522 - 36743581
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  36743522 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20148821 - 20148759
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||||||| ||| ||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  20148821 tccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttct 20148759  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26125696 - 26125635
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||||||| ||||||||||||   |||| |||||||||||||||||||||||||||||    
T  26125696 tccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttc 26125635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30660781 - 30660840
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||| ||||||||||||| ||||||||||||    
T  30660781 tccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacatttt 30660840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33630032 - 33630095
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctt 64  Q
    |||||||| ||| ||||||||||||||||||| || |||||||||||  |||||||||||||||    
T  33630032 tccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttctt 33630095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45397377 - 45397318
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||| | ||||||||||    
T  45397377 tccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacatttt 45397318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 2166005 - 2166061
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||| ||||||| |||||||||||||| |||||| |||||| |||||    
T  2166005 ctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2547057 - 2546998
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||||  |||||| ||||||| ||||| ||||||||||||    
T  2547057 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 2546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5754964 - 5754905
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||| ||||| ||||||||| | |||||||||||| |||||| ||||||||||||    
T  5754964 tccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35181577 - 35181518
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||||||||||||||  |||||| || ||||||||||| ||||||||||||    
T  35181577 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42197474 - 42197533
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| | |||| ||||| |||||||||||||| |||||| ||||||||||||    
T  42197474 tccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34304849 - 34304785
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||| |||||||||||||||  |||||| || |||||| |||| |||||||||||| ||||    
T  34304849 tccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattttcctta 34304785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1375603 - 1375544
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||| ||||||||||||||  |||||| ||||||| |||||| |||||| |||||    
T  1375603 tccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaatttt 1375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 28977183 - 28977148
Alignment:
Q  25 gaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28977183 gaggtgtaggaataaagggtgttcatgtaacatttt 28977148  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 37038609 - 37038659
Alignment:
Q  10 catggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||| |  || ||| ||||||||||||||||||||||||||    
T  37038609 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 37038659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42100749 - 42100690
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42100749 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 46941114 - 46941055
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  46941114 tccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40808926 - 40808862
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||    
T  40808926 tccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcctta 40808862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45126967 - 45127026
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  45126967 tccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 47191068 - 47191128
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  47191068 ctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcctta 47191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 54246190 - 54246246
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  54246190 ctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 54246246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 1078286 - 1078227
Alignment:
Q  3 cctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  1078286 cctaatacattaggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttttc 1078227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25413742 - 25413683
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25413742 tccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 25413683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54237157 - 54237098
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  54237157 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24688441 - 24688500
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||||||||  |||||| ||||||||||||| ||||||||||||    
T  24688441 tccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 24688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42394458 - 42394517
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||||||||   ||||||||||||||||||| ||||||||||||    
T  42394458 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27748624 - 27748563
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||||  |||||| ||||||||||| ||||||| |||||| ||||||||||||||    
T  27748624 tccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttc 27748563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53273723 - 53273787
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||||||||| ||||||||||||| |||||||||| | |||| || ||||||||| ||||    
T  53273723 tccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttcctta 53273787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 53581897 - 53581959
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    |||||||||||| || |||||||||  ||||| |||||||| ||||| |||||||||||||||    
T  53581897 tccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttct 53581959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9434185 - 9434126
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||||||||||||||   ||||| || ||||||||||| ||||||||||||    
T  9434185 tccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacatttt 9434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 25996325 - 25996270
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||| |||||||||||||| || |||| || ||||||||||| ||||||||||||    
T  25996325 taatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacatttt 25996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 29558275 - 29558330
Alignment:
Q  3 cctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatt 58  Q
    ||||||| || |||||||||||||| |||| |||||||||||||| || |||||||    
T  29558275 cctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36150191 - 36150132
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||| |||||| ||||||| |||| |||||| ||||||||||| || ||||||||||||    
T  36150191 tccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacatttt 36150132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40480810 - 40480751
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| || ||||||||| ||  || |||||||||||||| ||||||||||||    
T  40480810 tccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacatttt 40480751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 4190307 - 4190363
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||  ||||||||||  |||||| || ||||||||||| ||||||||||||    
T  4190307 ctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 4190363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43571125 - 43571184
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43571125 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 37814835 - 37814780
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  37814835 taatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 37814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5489837 - 5489778
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  5489837 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 4401386 - 4401326
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaat-aaagggtgtttatgtaacatttttct 63  Q
    ||||||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||||||    
T  4401386 ctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttttct 4401326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 44112738 - 44112674
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||| |||||||||||||||  |||||| || ||||||||||| |||||||||||| ||||    
T  44112738 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctta 44112674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 750344 - 750403
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||||||| | ||||||||||    
T  750344 tccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacatttt 750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24769538 - 24769597
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||||||||  |||||| |||||| |||||| ||| ||||||||    
T  24769538 tccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacatttt 24769597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48499001 - 48499060
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||||  |||||| ||||||| ||||| ||||||||||||    
T  48499001 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 48499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 2497605 - 2497663
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||| |||||||||||||||   |||| ||||||| ||||||||||||||||||||||    
T  2497605 taatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttct 2497663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 7447882 - 7447826
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||| ||||||||| | |||||||||||||| |||| ||||||||||||||    
T  7447882 taatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttttc 7447826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 38335975 - 38335920
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||| |||||| |||||||| ||||||| || ||||||||||| ||||||||||||    
T  38335975 taatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 48119685 - 48119630
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||| |||||||||||||||  |||||| || ||||||||||| ||||||||||||    
T  48119685 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 48119630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50448299 - 50448358
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||  |||||||||||  |||||| ||||||| ||||| ||||||||||||    
T  50448299 tccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 50448358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 41065213 - 41065155
Alignment:
Q  2 ccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||| ||||||||||||||   |||||| || ||||||||||| ||||||||||||    
T  41065213 ccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 51898653 - 51898603
Alignment:
Q  10 catggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||| |  || ||| ||||||||||||||||||||||||||    
T  51898653 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 51898603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 35003345 - 35003296
Alignment:
Q  11 atggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||  |||||| || ||||||||||| ||||||||||||    
T  35003345 atggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35003296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 746 - 687
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  746 tccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26670048 - 26670107
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  26670048 tccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 26466859 - 26466801
Alignment:
Q  2 ccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  26466859 ccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacatttt 26466801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 7273377 - 7273433
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  7273377 ctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 3213457 - 3213402
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  3213457 taatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9698372 - 9698431
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  9698372 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24204026 - 24204087
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||||||||| |||||||||  |||||||||||||| |||||| ||||||||||||||    
T  24204026 tccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttc 24204087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 30736040 - 30735979
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||| ||||||||||| ||||||||||||||  ||||| |||||||||||||||||    
T  30736040 ctaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttctta 30735979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 21293720 - 21293775
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||| |||  |||| |||||||||||||||||||||||||||    
T  21293720 taatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacatttt 21293775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 30014402 - 30014345
Alignment:
Q  3 cctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||| |||| | ||||||||||||||||||| ||||||||||||    
T  30014402 cctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 33242460 - 33242400
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||||||||||| ||||||| || |||| |||||| |||||||||||| ||||    
T  33242460 taatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattttcctta 33242400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7292808 - 7292749
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||| ||||||||||| ||||||| ||||||  |||||||||||    
T  7292808 tccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7367610 - 7367551
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||| |||||||||||||||| ||||||| | |||| || |||||||||    
T  7367610 tccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13743260 - 13743319
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  13743260 tccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13748760 - 13748819
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  13748760 tccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21279990 - 21279931
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||| ||| |||||   ||||| ||||||||||||| ||||||||||||    
T  21279990 tccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacatttt 21279931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 27441599 - 27441542
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||| || ||||||||  |||||| || ||||||||||| ||||||||||||||    
T  27441599 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 27441542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 25915029 - 25915087
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25915029 ctaatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 25915087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 33855084 - 33855141
Alignment:
Q  3 cctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  33855084 cctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5257056 - 5256993
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctt 64  Q
    ||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||    
T  5257056 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttctt 5256993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18034043 - 18033979
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||| |||||||||||| ||||    
T  18034043 tccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcctta 18033979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2614688 - 2614747
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  2614688 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22512366 - 22512307
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||    
T  22512366 tccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 22512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41334702 - 41334761
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  41334702 tccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33801530 - 33801466
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||||| |||||||||| ||||||| |||||||| |||| |||||||||||| ||||    
T  33801530 tccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcctta 33801466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 38470636 - 38470576
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||||||||||||   |||| ||||||||||||||||||||||||||| ||||    
T  38470636 taatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcctta 38470576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7617194 - 7617135
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||| ||||  ||||| |||||||||||||| ||||||||||||    
T  7617194 tccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32473433 - 32473492
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||| |||||||||| ||||||| || ||||||||||| ||||||||||||    
T  32473433 tccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 1771308 - 1771364
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1771308 ctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27893881 - 27893943
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  27893881 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttct 27893943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27864625 - 27864557
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttcttagttg 69  Q
    ||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||||||| ||| ||||    
T  27864625 tccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcctttgttg 27864557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28988534 - 28988475
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  28988534 tccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33703202 - 33703143
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||    
T  33703202 tccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 33703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 43514726 - 43514789
Alignment:
Q  2 ccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||||||  ||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  43514726 ccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttttctta 43514789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 55966385 - 55966444
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||    
T  55966385 tccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43949840 - 43949902
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaat-aaagggtgtttatgtaacatttttc 62  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||    
T  43949840 tccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttttc 43949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 35017788 - 35017735
Alignment:
Q  7 atacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  35017788 atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacatttt 35017735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25051754 - 25051690
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||| |||| ||||||| ||||    
T  25051754 tccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcctta 25051690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 27316756 - 27316811
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||| ||||||||||||||||||||||||||  | |||||||||    
T  27316756 taatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacatttt 27316811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27550370 - 27550311
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||||  |||||| ||||||||||||| ||||||||||||    
T  27550370 tccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 27550311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48463489 - 48463548
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||| ||||||||||  |||| ||||||| |||||||||||||||||||    
T  48463489 tccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacatttt 48463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39631162 - 39631100
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaat-aaagggtgtttatgtaacatttttc 62  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||| ||||||||    
T  39631162 tccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttttc 39631100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 12497014 - 12496958
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||  |||||||||||||||||||| || |||||||||    
T  12497014 ctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 12496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28982861 - 28982925
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||| ||||| ||||||||  ||||||| ||||||||||||| |||||||||||| ||||    
T  28982861 tccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcctta 28982925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41878467 - 41878408
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||  || ||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  41878467 tccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 3756289 - 3756347
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    |||| |||||||||||||||  |||||| || ||||||||||| |||||||||||||||    
T  3756289 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttct 3756347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23204817 - 23204875
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacattt 59  Q
    |||||||||||| || ||||||||| | ||||||||||||| ||||| |||||||||||    
T  23204817 tccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23036041 - 23035982
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||| || |||||||||||  ||||||||||||||||  ||| ||||||||||||    
T  23036041 tccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 41327596 - 41327643
Alignment:
Q  15 ggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||| |||||  ||||||||||||| |||||||||||||||    
T  41327596 ggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttttc 41327643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31680963 - 31680901
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||||||| | |||||||||||||   |||| ||||||| |||||||| |||||||||||||    
T  31680963 tccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttttct 31680901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 43735800 - 43735742
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||||||  |||| |||||| |||||||||||||| |||| |||||| |||||||    
T  43735800 ctaatacatggaatgtataatgagatgtaggaataaaggatgttcatgtaatatttttc 43735742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 50526141 - 50526091
Alignment:
Q  10 catggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||| |  || ||| ||||||||||||||||||||||||||    
T  50526141 catggggtgtacaagggtgtatagaaataaagggtgtttatgtaacatttt 50526091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 41848029 - 41847973
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||| ||||||||||||||||||||||  ||| ||||| ||||  |||||||||||    
T  41848029 ctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacatttt 41847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33229363 - 33229299
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaat-aaagggtgtttatgtaacatttttctt 64  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  33229363 tccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttttctt 33229299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1750475 - 1750416
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  1750475 tccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16096808 - 16096749
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  16096808 tccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12302292 - 12302351
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  12302292 tccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 12302351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30838693 - 30838634
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||| ||||||||||||    
T  30838693 tccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43490440 - 43490502
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    |||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||||||    
T  43490440 tccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttct 43490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43335802 - 43335866
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||| || ||||||||| ||||    
T  43335802 tccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcctta 43335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 4764769 - 4764824
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||  |||||||||||||| |||||| ||||||||||||    
T  4764769 taatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacatttt 4764824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12415499 - 12415558
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| ||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  12415499 tccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12427559 - 12427618
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| ||||||||||||||| ||||||| || ||||||||||| ||||||||||||    
T  12427559 tccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19047218 - 19047159
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||||||||   ||||||||||||||||||| ||||||||||||    
T  19047218 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 34817824 - 34817874
Alignment:
Q  10 catggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  34817824 catggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11825693 - 11825754
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||| |||||||||||||||  |||||| || ||||||||||| ||||||||||||||    
T  11825693 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 11825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41282013 - 41282074
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||| |||||||||||||||  |||||| || ||||||||||| ||||||||||||||    
T  41282013 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 41282074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43114618 - 43114559
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||||||||||||||  |||||| || ||||||||||| ||||||||||||    
T  43114618 tccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 43114559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 966877 - 966937
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||| |||||||||||||||  |||||| || ||||||||||| |||||||||||| ||||    
T  966877 taatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctta 966937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16804029 - 16803965
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||| |||||| ||||||||  |||||| || ||||||||||| |||||||||||| ||||    
T  16804029 tccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctta 16803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16843311 - 16843247
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||| |||||| ||||||||  |||||| || ||||||||||| |||||||||||| ||||    
T  16843311 tccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattttcctta 16843247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13780774 - 13780833
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||  |||||||||||||||||||||  |||||||  ||||| ||||||||||||    
T  13780774 tccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacatttt 13780833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 42849911 - 42849944
Alignment:
Q  27 ggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||||||| ||||||||||||    
T  42849911 ggtgtaggaataaagggtgttcatgtaacatttt 42849944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35069782 - 35069723
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||    
T  35069782 tccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 10573808 - 10573749
Alignment:
Q  3 cctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||    
T  10573808 cctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24001051 - 24001110
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  24001051 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42538470 - 42538529
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  42538470 tccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44326239 - 44326177
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||||||| ||| ||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  44326239 tccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttct 44326177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32029856 - 32029908
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgta 53  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  32029856 tccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43343663 - 43343727
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||||||||||||||||||  ||||||| |||||| | |||| |||||||||||||||||    
T  43343663 tccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttctta 43343727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5810963 - 5811022
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||| || |||||||||||| ||||||||||||||||||| | ||||||||||||    
T  5810963 tccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacatttt 5811022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 16180400 - 16180457
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    |||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  16180400 taatacgtggggtgtacaatg-ggtgtaggaataaatggtgttgatgtaacatttttct 16180457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44416973 - 44417034
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    ||||||||||||||||||||||||  ||||||| |||||| | |||| ||||||||||||||    
T  44416973 tccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5015456 - 5015397
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||||  |||||| ||||||| ||||| ||||||||||||    
T  5015456 tccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 5015397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 5194278 - 5194329
Alignment:
Q  9 acatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||| ||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  5194278 acatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 5194329  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42972913 - 42972854
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||| |||||||||||  ||||||||||||||| |||| | ||||||||||    
T  42972913 tccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacatttt 42972854  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45326081 - 45326026
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaaca 56  Q
    ||||||||| ||||||||||||||| | |||| ||||||| |||||||||||||||    
T  45326081 tccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaaca 45326026  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 41861731 - 41861671
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    |||||||| ||||||| |||  |||||| |||||||||||||| |||||||||||| ||||    
T  41861731 taatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacattttcctta 41861671  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40236980 - 40236921
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||||||||||||||  | |||| || ||||||||||| ||||||||||||    
T  40236980 tccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacatttt 40236921  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 43317488 - 43317445
Alignment:
Q  17 tgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||    
T  43317488 tgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 47279744 - 47279795
Alignment:
Q  9 acatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    ||||||||||||||||| | |||| ||||||||||| ||||||||| |||||    
T  47279744 acatggggtgtacaatgggatgtatgaataaagggtatttatgtaatatttt 47279795  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 4638242 - 4638300
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttct 63  Q
    ||||| ||||||||||||||   ||||| ||||||| |||||| |||||||||||||||    
T  4638242 taatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttct 4638300  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26898441 - 26898499
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacattt 59  Q
    ||||||||||||||  ||||||||  |||||| ||||||| |||||| |||||||||||    
T  26898441 tccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

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Target: scaffold0187 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14227 - 14286
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| || ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  14227 tccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 14286  T

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Target: scaffold0187; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24555 - 24614
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| || ||||||||| ||||||| ||||||||||||| ||||||||||||    
T  24555 tccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 24614  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 112716 - 112657
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| ||||||||||||   ||||||||||||||||||| ||||||||||||    
T  112716 tccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11312 - 11248
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttctta 65  Q
    ||||||||| ||||||||||||||| |||||| |||||||| ||||| |||| ||||||| ||||    
T  11312 tccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcctta 11248  T

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Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 23463 - 23519
Alignment:
Q  4 ctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||||||| |||||||||  |||||||||||||||||||| || |||||||||    
T  23463 ctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 23519  T

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Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35495 - 35554
Alignment:
Q  1 tccctaatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttt 60  Q
    |||||||| |||||||||||||||  |||||| || |||| |||||||||||||||||||    
T  35495 tccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacatttt 35554  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 45762 - 45819
Alignment:
Q  5 taatacatggggtgtacaatgaggtgtaggaataaagggtgtttatgtaacatttttc 62  Q
    |||||||| || ||||||||  |||||| || ||||||||||| ||||||||||||||    
T  45762 taatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 45819  T

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