View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2337_low_7 (Length: 402)

Name: NF2337_low_7
Description: NF2337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2337_low_7
NF2337_low_7
[»] chr1 (7 HSPs)
chr1 (30-231)||(39897672-39897873)
chr1 (226-384)||(39897934-39898091)
chr1 (52-231)||(39874578-39874757)
chr1 (40-231)||(39882692-39882885)
chr1 (229-374)||(39882933-39883082)
chr1 (231-383)||(39874817-39874972)
chr1 (86-136)||(39890205-39890255)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 39897672 - 39897873
Alignment:
Q  30 agaagtgggcgatgaaggtatgtctaaggtgaatatctgaacaaagcactttttacagtcagaaatttgcagaacagcatgtaacaaaaaatcaatagct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39897672 agaagtgggcgatgaaggtatgtctaaggtgaatatctgaacaaagcactttttacagtcagaaatttgcagaacagcatgtaacaaaaaatcaatagct 39897771  T
Q  130 aaccataacttacaaatagcagaaacctataatttcaaatggttaggaaaggacaaaaacttgtggtttaacaaattacgagaaatgaaaacatgtaaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  39897772 aaccataacttacaaatagcagaaacctataatttcaaatggttaggaaaggacacaaacttgtggtttaacaaattacaagaaatgaaaacatgtaaag 39897871  T
Q  230 aa 231  Q
    ||    
T  39897872 aa 39897873  T

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Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 226 - 384
Target Start/End: Original strand, 39897934 - 39898091
Alignment:
Q  226 aaagaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaac 325  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  39897934 aaagaaacaagatgtgatgatagaatcttactagcagatatgatagactgatcgtc-ggatccacacttggttgttttctgaagtcaatgcaagtttaac 39898032  T
Q  326 aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39898033 aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataa 39898091  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 52 - 231
Target Start/End: Original strand, 39874578 - 39874757
Alignment:
Q  52 tctaaggtgaatatctgaacaaagcactttttacagtcagaaatttgcagaacagcatgtaacaaaaaatcaatagctaaccataacttacaaatagcag 151  Q
    ||||| |||||| |||||||||||||||| ||  |||||||||| || ||||||| ||||||||||||||  ||||||||||||| ||||  |||| |||    
T  39874578 tctaaagtgaatgtctgaacaaagcacttatttaagtcagaaatgtgaagaacagtatgtaacaaaaaattgatagctaaccataccttatgaatatcag 39874677  T
Q  152 aaacctataatttcaaatggttaggaaaggacaaaaacttgtggtttaacaaattacgagaaatgaaaacatgtaaagaa 231  Q
    ||||  ||||||  |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||    
T  39874678 aaacacataattgaaaatggttaggaaagggcacaaacttgcggtttaacaaattacgagaaatgaaaacatataaagaa 39874757  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 39882692 - 39882885
Alignment:
Q  40 gatgaaggta--tgtctaaggtgaatatctgaacaaagcactttttacagtcagaaatttgcagaacagcatgtaacaaaaaatcaatagctaaccataa 137  Q
    ||||||||||  |||||||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||| ||||| | |||||||||| |||||||||     
T  39882692 gatgaaggtaattgtctaaggtgaatgtctgaacaaagcacttgttaaagtcaaaaatgtgcagaacagcgtgtaatagaaaatcaataactaaccatac 39882791  T
Q  138 cttacaaatagcagaaacctataatttcaaatggttaggaaaggacaaaaacttgtggtttaacaaattacgagaaatgaaaacatgtaaagaa 231  Q
      ||| ||||||||||||  | ||||| ||||| | ||||  ||||| |||||||  ||||||||||||| ||||||| |||||||||| ||||    
T  39882792 tatactaatagcagaaacaaacaattttaaatgctcaggagtggacacaaacttgcagtttaacaaattatgagaaataaaaacatgtacagaa 39882885  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 374
Target Start/End: Original strand, 39882933 - 39883082
Alignment:
Q  229 gaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaa 328  Q
    ||||||||||||||||||||||||||||||||||| |   ||| | |||| | ||||||||||||||||||||||||||| |||  || |||||||||||    
T  39882933 gaaacaagatgtgatgatagaatcttactagcagaaattgtagccggatcataaggatccacacttggttgttttctgaattcagcgcgagtttaacaaa 39883032  T
Q  329 tttgc---agttctaatagaataat-tatttcttctaggaatttcatttt 374  Q
    |||||   |||||||||||||||||  | |||||||||||||||||||||    
T  39883033 tttgcacaagttctaatagaataatgaaattcttctaggaatttcatttt 39883082  T

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Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 383
Target Start/End: Original strand, 39874817 - 39874972
Alignment:
Q  231 aacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaatt 330  Q
    ||||| ||||||||||||||||||||||||||| |   || ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| |    
T  39874817 aacaatatgtgatgatagaatcttactagcagaaa---taaactgatcatgaggatccacacttggttgttttctgaattcagcgcaagtttaacaaa-t 39874912  T
Q  331 tgc---agttctaatagaa----taattatttcttctaggaatttcattttattagtata 383  Q
    |||   |||||| ||| ||    |||| ||||||||||||||||||||||||||||||||    
T  39874913 tgcacaagttcttatacaataactaatgatttcttctaggaatttcattttattagtata 39874972  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 39890205 - 39890255
Alignment:
Q  86 agtcagaaatttgcagaacagcatgtaacaaaaaatcaatagctaaccata 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  39890205 agtcagaaatgtgcagaacagcatgtaacaaaaaatcaatagctaatcata 39890255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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