View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2338_low_2 (Length: 397)
Name: NF2338_low_2
Description: NF2338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2338_low_2 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 1193818 - 1194192
Alignment:
| Q |
11 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1193818 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaaca |
1193917 |
T |
|
| Q |
111 |
gaaaatattggttgaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1193918 |
gaaaatattggttgaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcaaatcaaatagccaacttgttagcaaaagtatg |
1194017 |
T |
|
| Q |
211 |
atcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtc |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194018 |
atcacaaatgggtggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtc |
1194117 |
T |
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| Q |
311 |
gtgttcaagggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194118 |
gtgttcaagggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttg |
1194192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 1236870 - 1236732
Alignment:
| Q |
11 |
gtgagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| || |||||||||| | |||||||| |||||||||||||| || |||||| |||| || |
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| T |
1236870 |
gtgagatgaagccgatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagca |
1236771 |
T |
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| Q |
111 |
gaaaatattggttgaaaggttgtaagataagtatagaat |
149 |
Q |
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||||||||||||||||||||| | |||| |||| ||||| |
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| T |
1236770 |
gaaaatattggttgaaaggttattagattagtacagaat |
1236732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 1182887 - 1183023
Alignment:
| Q |
13 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacaga |
112 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||| ||| |||||| | |||||||| ||| |||||||||| || |||| ||||| ||| |
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| T |
1182887 |
gagatgaagccgatgtttgtaacatcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaaga |
1182986 |
T |
|
| Q |
113 |
aaatattggttgaaaggttgtaagataagtatagaat |
149 |
Q |
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|||||||||||||||||||||| || ||||||||||| |
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| T |
1182987 |
aaatattggttgaaaggttgtaggagaagtatagaat |
1183023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 897601 - 897709
Alignment:
| Q |
41 |
ttgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttgtaagataa |
140 |
Q |
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|||| |||||||||| |||| ||||| | |||||| | ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
897601 |
ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa |
897700 |
T |
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| Q |
141 |
gtatagaat |
149 |
Q |
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||||||||| |
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| T |
897701 |
gtatagaat |
897709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 1183283 - 1183350
Alignment:
| Q |
318 |
agggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttg |
385 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1183283 |
agggagttttccttctggtggtcctatgcagtttgctggctgcagcatagttggggttgatatttttg |
1183350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 1236609 - 1236472
Alignment:
| Q |
167 |
aaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctg |
266 |
Q |
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||||||||||| |||||||||||| |||||||| ||| | | ||||||| ||||||| ||| ||||||| ||| | ||||||||||||||| |||| |
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| T |
1236609 |
aaaaaggaagccaatcaaatagccgacttgttaataaatgaaggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctg |
1236510 |
T |
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| Q |
267 |
ccgagttctatttttgtagctgttgcagtatttttgcg |
304 |
Q |
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| |||||| ||||||||||||||||| | |||||||| |
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| T |
1236509 |
caaagttctgtttttgtagctgttgcactctttttgcg |
1236472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 1236433 - 1236369
Alignment:
| Q |
319 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
383 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1236433 |
gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
1236369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 20067 - 20184
Alignment:
| Q |
13 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacaga |
112 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| || || ||| ||||| | |
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| T |
20067 |
gagatgaagctgatgtttgtgacatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttcaa-aat |
20165 |
T |
|
| Q |
113 |
aaatattggttgaaaggtt |
131 |
Q |
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||||||||||||||||||| |
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| T |
20166 |
aaatattggttgaaaggtt |
20184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 20472 - 20536
Alignment:
| Q |
319 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
383 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||| |
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| T |
20472 |
gggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatatttt |
20536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 20295 - 20405
Alignment:
| Q |
170 |
aaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccg |
269 |
Q |
| |
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|||||||| ||||||||| || ||| ||||| ||||||| ||| || || |||||||| |||||||| ||| || |||| |||||||||| ||||||| |
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| T |
20295 |
aaggaagctaatcaaataaccgactcgttagtaaaagtaggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccg |
20394 |
T |
|
| Q |
270 |
agttctatttt |
280 |
Q |
| |
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|||||| |||| |
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| T |
20395 |
agttctgtttt |
20405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 12857383 - 12857447
Alignment:
| Q |
319 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
383 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||| |
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| T |
12857383 |
gggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatatttt |
12857447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 20256510 - 20256468
Alignment:
| Q |
341 |
ctatgcagtttgctggctgcagcatagttggtgttgatatttt |
383 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatatttt |
20256468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 20256919 - 20256866
Alignment:
| Q |
13 |
gagatgaagccgatgtttgcaacatcaattgggttaaaagactaaaatgaatct |
66 |
Q |
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||||||| || |||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
20256919 |
gagatgaggctgatgtttgggacatcaattggcttaaaagactcaaatgaatct |
20256866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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