View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2339_high_13 (Length: 257)
Name: NF2339_high_13
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_high_13 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 36156 - 36393
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36156 |
gatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagaga |
36255 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
36256 |
tgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtt |
36355 |
T |
|
| Q |
216 |
tatggttctgttggttgtatcttgggcaatgttcattt |
253 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||| |
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| T |
36356 |
tatggttatgttggttgtattttgggcaatgttcattt |
36393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 23573463 - 23573699
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||| |||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||| |
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| T |
23573463 |
gatggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagc |
23573562 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||| |
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|
| T |
23573563 |
tgctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtt |
23573662 |
T |
|
| Q |
216 |
tatggttctgttggttgtatcttgggcaatgttcatt |
252 |
Q |
| |
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|||| || ||||||||||||||||||||||||||| |
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| T |
23573663 |
tatgtttacattggttgtatcttgggcaatgttcatt |
23573699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 31815098 - 31814943
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | |||| || ||||| |||||||| |||||||||| |
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|
| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc |
31814999 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
240 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
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|
| T |
31814998 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 13507850 - 13507638
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
13507850 |
gatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagaga |
13507751 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||| |||||||| ||||||||||||| || |||| |||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
13507750 |
tgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtt |
13507651 |
T |
|
| Q |
216 |
tatggttctgttg |
228 |
Q |
| |
|
|||| || ||||| |
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|
| T |
13507650 |
tatgattttgttg |
13507638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 13507399 - 13507611
Alignment:
| Q |
16 |
gatggacatcatccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagaga |
115 |
Q |
| |
|
|||||||||| ||| |||||||||| || || ||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
13507399 |
gatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagaga |
13507498 |
T |
|
| Q |
116 |
tgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgtt |
215 |
Q |
| |
|
|| |||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||||||||| |||| ||||| ||| | ||||||||||| |
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|
| T |
13507499 |
tgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtt |
13507598 |
T |
|
| Q |
216 |
tatggttctgttg |
228 |
Q |
| |
|
||||||| ||||| |
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|
| T |
13507599 |
tatggttttgttg |
13507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
241 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||||| || |||||||||| |
|
|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
241 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 241
Target Start/End: Complemental strand, 3585 - 3429
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
241 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 22059491 - 22059336
Alignment:
| Q |
85 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaatttggaatcaacaaaaatgagaagttaaagaagaagc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
185 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
240 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
79 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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