View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_high_4 (Length: 447)
Name: NF2339_high_4
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 52091203 - 52091609
Alignment:
| Q |
11 |
cagagacttttgactaagcaagttgggggaacaatattatagatgaagtgttgctcattgagcttgaattgcagttcatatttcctctcaatcttgtcct |
110 |
Q |
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| T |
52091203 |
cagagacttttgactaagaaagttgggggaacaatattatagatgaagtgttgctcattgagcttgaattgcagttcatatttcctctcaatcttgtcct |
52091302 |
T |
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| Q |
111 |
tctcagaagagaaatcaagttgcaatagctgcaaagagtgtattgtcatcatcaaagtgaaattgaagctttcacggtcgctttaatggatcccaactct |
210 |
Q |
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| T |
52091303 |
tctcagaagagaaatcaagttgcaatagctgcaaagagtatattgtcatcatcaaagtgaaattgaagctttcacggtcgctttaatggatccca-ctct |
52091401 |
T |
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| Q |
211 |
tcaaaatttgttagaaattcagcaaaaacacttgtgatatcttctatagttccatgtttgacaggaacttggttccacaagtttctccatctagtagata |
310 |
Q |
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| T |
52091402 |
tcaaaatttgttagaaattcagcaaaaacactagtgatatcttctatagttccatgtttgacaagaacttggttccacaagtttctccatctagtagata |
52091501 |
T |
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| Q |
311 |
tgatatgaggcttgtttgaagtgcatattcattaggtagaagagatattatgcagcctagagtttcatctggcaaatttctaaagatcctctacattttc |
410 |
Q |
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| T |
52091502 |
tgatatgaggcttgtttgaagtgcatattcattaggtagaagagatattatgcagcctagagtttcatctggcaaatttctaaagatcctctacattttc |
52091601 |
T |
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| Q |
411 |
ttccattg |
418 |
Q |
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| T |
52091602 |
ttccattg |
52091609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 128 - 394
Target Start/End: Original strand, 52098423 - 52098683
Alignment:
| Q |
128 |
agttgcaatagctgcaaagagtgtattgtcatcatcaaagtgaaattgaagctttcacggtcgctttaatggatcccaactcttcaaaatttgttagaaa |
227 |
Q |
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||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||| || ||||||||||| ||||| ||||| |||||||| | |||||| |
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| T |
52098423 |
agttgcaatagctgcaaggagtgcattgtcatcagcaaagtgaaatcgaagcttgcatggtcgctttaacggatct-aactcatcaaaattggctagaaa |
52098521 |
T |
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| Q |
228 |
ttcagcaaaaacacttgtgatatcttctatagttccatgtttgacaggaacttggttccacaagtttctccatctagtagatatgatatgaggcttgttt |
327 |
Q |
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| T |
52098522 |
ttcagcaacagcaccagtgatatcttccatagttccatgtttaacaagaacatggttccataagtctctccacctggta-----gatatgaggctggttt |
52098616 |
T |
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| Q |
328 |
gaagtgcatattcattaggtagaagagatattatgcagcctagagtttcatctggcaaatttctaaa |
394 |
Q |
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| T |
52098617 |
caagtgcatattcatttggtagaaaagatactatgcagcctagaatttcatctggcaaatatctaaa |
52098683 |
T |
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