View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_high_6 (Length: 337)
Name: NF2339_high_6
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 45652210 - 45652539
Alignment:
| Q |
12 |
atgaaagattaaataggttttgttctaatcctaagttgttagactgatcttactagatacacttcatagtcccaatcttatagaattttggaatactaat |
111 |
Q |
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| T |
45652210 |
atgaaagattaaataggttttgttctaatcctaagttgttagactgatcttactagatacacttcatagtcccaatcttatagaattttggagtactaat |
45652309 |
T |
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| Q |
112 |
gactgccatttacaca--taaaaggcaaagcaaacttaaaaggtt----------------caagagaaagaagctttcaacattgttaaagacatatga |
193 |
Q |
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| T |
45652310 |
gactgccatttacacaaataaaaggcaaagcaaacttaaaaggtttgagcatatttgaattcaagagaaagaagctttcaacattgttaaagacatatga |
45652409 |
T |
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| Q |
194 |
tacaagtattgaagaccacaattttacactactacc----acaacaatatttaacgccataattttaccatcagatgcataatcatgcatgcatttcaat |
289 |
Q |
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| T |
45652410 |
tacaagtattgaagaccacaattttacactactaccggccacaacaatatttaacaccataattttaccatcagaggcataatcatgcatgcatttcaat |
45652509 |
T |
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| Q |
290 |
gattcatagtctctaaacaaatgaccatat |
319 |
Q |
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| T |
45652510 |
gattcatagtctctaaacaaatgaccatat |
45652539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 31523806 - 31523884
Alignment:
| Q |
193 |
atacaagtattgaagaccacaattttacactactaccacaacaatatttaacgccataattttaccatcagatgcataa |
271 |
Q |
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||||||||||||||||||| |||||||||| ||| ||| |||||||||||| ||||||||||| || |||| |||||| |
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| T |
31523806 |
atacaagtattgaagaccaaaattttacaccactgacactacaatatttaacaccataattttatcaacagaggcataa |
31523884 |
T |
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