View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_10 (Length: 401)
Name: NF2339_low_10
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 65 - 388
Target Start/End: Complemental strand, 28764949 - 28764629
Alignment:
| Q |
65 |
agcagcaccacagacatctcctcattcaacaaccttgtctcaacggctatcgaatgagaactttccaactccatctgaagctcttccactgctgcaattt |
164 |
Q |
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| T |
28764949 |
agcagcatcacagacatctcctcatttaacaaccttgtctcaacgactatcaaatgagaactttccaactccatctgaagctcttccactgctgcaattt |
28764850 |
T |
|
| Q |
165 |
tggcttccaactcagactgacacgtattcagttgtccagtcaattgttctatccgagagtcccattcggcctctctagccttaagagtcaaagcacactc |
264 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28764849 |
tggcttccaactcagattgacacgtattcagttgtccagtcaattgttctatccgagagtcccattcggcctctctagccttaagagtcaaagcacactc |
28764750 |
T |
|
| Q |
265 |
tttatgtgtttgttctaaatttttaagcttggtcctcaactttgactgcgaatagtaagcacctgcttcttgaatttgagattcctgtagttctctgagt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28764749 |
tttatgtgtttgttctaaatttttaagcttggtcctcaactttgactgcgaatagtaagcacctg---cttgaatttgagattcctgtagttctctgagt |
28764653 |
T |
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| Q |
365 |
gacatccttaactcttgattttct |
388 |
Q |
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|||||||||||||||||||||||| |
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| T |
28764652 |
gacatccttaactcttgattttct |
28764629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 13767881 - 13767833
Alignment:
| Q |
340 |
ttgagattcctgtagttctctgagtgacatccttaactcttgattttct |
388 |
Q |
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|||||||||||| |||||||| || ||| ||||||||| |||||||||| |
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| T |
13767881 |
ttgagattcctgaagttctcttagagacttccttaactgttgattttct |
13767833 |
T |
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