View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2339_low_11 (Length: 369)

Name: NF2339_low_11
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2339_low_11
NF2339_low_11
[»] chr2 (5 HSPs)
chr2 (14-325)||(24454417-24454730)
chr2 (114-288)||(23348923-23349100)
chr2 (185-315)||(1615831-1615963)
chr2 (199-288)||(12741775-12741866)
chr2 (114-288)||(18355256-18355433)
[»] chr8 (6 HSPs)
chr8 (109-319)||(27541471-27541683)
chr8 (130-263)||(5662583-5662719)
chr8 (114-288)||(5657772-5657949)
chr8 (114-288)||(14677964-14678141)
chr8 (114-288)||(31100815-31100992)
chr8 (114-148)||(24788119-24788153)
[»] chr5 (5 HSPs)
chr5 (114-288)||(7473432-7473609)
chr5 (114-286)||(22009473-22009648)
chr5 (114-288)||(30442490-30442667)
chr5 (114-287)||(9043803-9043979)
chr5 (119-249)||(22004441-22004571)
[»] chr7 (4 HSPs)
chr7 (114-288)||(1262089-1262266)
chr7 (114-288)||(26909924-26910101)
chr7 (114-288)||(43071325-43071502)
chr7 (201-288)||(48849750-48849839)
[»] chr3 (10 HSPs)
chr3 (114-288)||(31685078-31685255)
chr3 (114-288)||(37982350-37982527)
chr3 (114-288)||(53973229-53973406)
chr3 (120-288)||(19882054-19882225)
chr3 (114-249)||(24761882-24762018)
chr3 (120-236)||(47763912-47764028)
chr3 (114-252)||(17681768-17681906)
chr3 (114-251)||(2549938-2550075)
chr3 (112-145)||(29861913-29861946)
chr3 (197-249)||(53027736-53027788)
[»] scaffold0035 (1 HSPs)
scaffold0035 (114-288)||(35064-35241)
[»] chr4 (2 HSPs)
chr4 (114-288)||(29863304-29863481)
chr4 (116-145)||(10195656-10195685)
[»] scaffold0596 (1 HSPs)
scaffold0596 (199-288)||(741-832)
[»] chr6 (4 HSPs)
chr6 (199-288)||(33045374-33045465)
chr6 (114-217)||(3065699-3065802)
chr6 (197-251)||(8976489-8976543)
chr6 (249-289)||(10092637-10092677)
[»] scaffold0096 (1 HSPs)
scaffold0096 (114-249)||(27411-27546)
[»] scaffold0045 (1 HSPs)
scaffold0045 (114-288)||(11577-11754)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 24454417 - 24454730
Alignment:
Q  14 agtgtagtgcttcttgcactcatatccattaacaatatataaatttacctatgctgataaatnnnnnnnnnttgtataattccgtctctatcatcaatct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||| |||||||||||  ||    
T  24454417 agtgtagtgcttcttgcactcatatccattaacaatatataaatttacctatgctgataaataaaaaaaa-ttgtataattccgcctctatcatcatact 24454515  T
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatc 24454615  T
Q  214 atttagcttgacattcatctcattctttgatctaatct---ttcaaactttcaaatttgatgtctttttcctatgcaccgaatttccatataacttatag 310  Q
    |||| |||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24454616 atttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcctatgcaccgaattcccatatagcttatag 24454715  T
Q  311 tgtaatgtgatgatg 325  Q
    |||||||||||||||    
T  24454716 tgtaatgtgatgatg 24454730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 23349100 - 23348923
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  23349100 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 23349001  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  23349000 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 23348923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 1615963 - 1615831
Alignment:
Q  185 ccaaacaaggaggaccgttggatctcatcatttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcct 282  Q
    ||||||||||  || ||||||||| |||||||| |||   ||| |||||||| |||||||||||| |   ||||||||||||||||||||| | ||||||    
T  1615963 ccaaacaagggagatcgttggatcgcatcatttggctaagcatgcatctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttcct 1615864  T
Q  283 atgcaccgaatttccatataacttatagtgtaa 315  Q
    || |||| |||| | ||||| ||||||||||||    
T  1615863 atacaccaaattccaatatagcttatagtgtaa 1615831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 12741775 - 12741866
Alignment:
Q  199 ccgttggatctcatcatttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||||||||||||||||| |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  12741775 ccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 12741866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 18355433 - 18355256
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||| ||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  |  |||||||||||||    
T  18355433 tcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctcat 18355334  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| |||| |||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  18355333 catttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 18355256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 109 - 319
Target Start/End: Complemental strand, 27541683 - 27541471
Alignment:
Q  109 aatcttcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatc 208  Q
    |||| |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| |||   || ||| ||||||||||    ||||||||||    
T  27541683 aatcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatc 27541584  T
Q  209 tcatcatttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcaccgaatttccatataactt 306  Q
    ||||||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||| |||| ||||||| |||    
T  27541583 tcatcatttggctaagcatgcatctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagctt 27541484  T
Q  307 atagtgtaatgtg 319  Q
    |||||||||||||    
T  27541483 atagtgtaatgtg 27541471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 263
Target Start/End: Original strand, 5662583 - 5662719
Alignment:
Q  130 tcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttagcttgacattc 229  Q
    |||||||||| ||||||||   | ||||||| | |||||||  ||||||||||| |||| |||||||| ||||| ||||||||||||| ||| | |||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattc 5662682  T
Q  230 atctcattctttgatctaatct---ttcaaactttca 263  Q
    ||||||| ||||||| ||||||   ||||||||||||    
T  5662683 atctcatcctttgatttaatctgacttcaaactttca 5662719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 5657772 - 5657949
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  ||||| |||||||   | ||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  5657772 tcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcat 5657871  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| | |   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  5657872 catttggttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 5657949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 14678141 - 14677964
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||| ||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  14678141 tcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 14678042  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   |||||||||||||||| |||| | ||||||||||||    
T  14678041 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctatgcac 14677964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 31100992 - 31100815
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||||| ||||||| |||  ||| ||| ||||| |||||  | ||||| ||||||||    
T  31100992 tcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcat 31100893  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| | |   |||  ||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  31100892 catttggttaagcatgtatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 31100815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 24788153 - 24788119
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaa 148  Q
    |||||||||||||||||| ||||||||||||||||    
T  24788153 tcatacttatatctaatcttaattaacattgctaa 24788119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 7473609 - 7473432
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  7473609 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 7473510  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    |||||||||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  7473509 catttagctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 7473432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 286
Target Start/End: Complemental strand, 22009648 - 22009473
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||     ||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  22009648 tcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 22009549  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgc 286  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||    
T  22009548 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgc 22009473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 30442667 - 30442490
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||| ||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  30442567 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 30442490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 287
Target Start/End: Original strand, 9043803 - 9043979
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  9043803 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 9043902  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgca 287  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||| ||| ||||||||||| | |||||||||||    
T  9043903 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctatgca 9043979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 22004571 - 22004441
Alignment:
Q  119 cttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcattta 218  Q
    ||||||||||||| |  |||||||||||||     ||||||| | |||||||  ||  ||||||| |||| ||||| || |||||||||||||||||||     
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttg 22004472  T
Q  219 gcttgacattcatctcattctttgatctaat 249  Q
    |||   ||||||| |||| ||||||||||||    
T  22004471 gctcagcattcatatcatcctttgatctaat 22004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 1262089 - 1262266
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| |||  ||| ||| ||||| |||||    ||||||||||||||    
T  1262089 tcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctcat 1262188  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  1262189 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 1262266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 26910101 - 26909924
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  ||||||||||||| | | ||||||| | ||||||| |||   || ||| ||||| |||||  |||| |||||||| ||    
T  26910101 tcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttat 26910002  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  26910001 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 26909924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 43071502 - 43071325
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  43071502 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 43071403  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  43071402 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 43071325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 48849839 - 48849750
Alignment:
Q  201 gttggatctcatcatttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||||||||||||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  48849839 gttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 48849750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 31685078 - 31685255
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaac-aaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| | ||||||||||||||   | ||||||| | ||||||| |||  ||| ||| |||||  ||||  | |||||| |||||||    
T  31685078 tcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctcat 31685177  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  31685178 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 31685255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 37982350 - 37982527
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  ||||||||||||||||    
T  37982350 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcat 37982449  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| |||| |||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  37982450 catttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 37982527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 53973406 - 53973229
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||    |||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  53973406 tcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctcat 53973307  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   | | |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  53973306 catttggctaagcctgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 53973229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 288
Target Start/End: Complemental strand, 19882225 - 19882054
Alignment:
Q  120 ttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcatcattta 218  Q
    |||||||||||| |  |||||||||||||    |||| ||| | ||||||| |||  ||| ||| || ||||||||  |||||||||||||||||||||     
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  219 gcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  19882125 gctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 19882054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 24762018 - 24761882
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    ||||||||||||||||||||  |||||||||||||   | ||||||| | ||||||| |||  ||| ||| ||||| ||| |  ||||||||||||||||    
T  24762018 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcat 24761919  T
Q  213 catttagcttgacattcatctcattctttgatctaat 249  Q
    ||||| |||   ||| |||||||| ||||||||||||    
T  24761918 catttggctcagcatgcatctcatcctttgatctaat 24761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 47764028 - 47763912
Alignment:
Q  120 ttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatcatttag 219  Q
    ||||||||||||||| ||||||||||||| | | ||||||| | |||| ||  | ||||||||| |||| |||||||| ||||||||||  ||||| | |    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctgg 47763929  T
Q  220 cttgacattcatctcat 236  Q
    || | ||||||||||||    
T  47763928 ctaggcattcatctcat 47763912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 252
Target Start/End: Original strand, 17681768 - 17681906
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  ||||||||| |||     ||||||| | ||||||| |||  ||| ||| |||||||||| || |||||||||||||||    
T  17681768 tcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcatc 17681867  T
Q  214 atttagcttgacattcatctcattctttgatctaatctt 252  Q
    |||| | |   ||| |||||||| |||||||||||||||    
T  17681868 atttggttaagcatgcatctcatcctttgatctaatctt 17681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 2549938 - 2550075
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcacc-aaacaaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| ||||||||||||||||   | ||||||| | ||||||| |||  ||| ||| || ||||||||  | ||||||||||| ||    
T  2549938 tcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-at 2550036  T
Q  213 catttagcttgacattcatctcattctttgatctaatct 251  Q
    ||||| |||   ||| |||||||| ||||||| ||||||    
T  2550037 catttggctaagcatgcatctcatcctttgatttaatct 2550075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 29861946 - 29861913
Alignment:
Q  112 cttcatacttatatctaatcctaattaacattgc 145  Q
    |||||||||||| |||||||||||||||||||||    
T  29861946 cttcatacttatttctaatcctaattaacattgc 29861913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 53027788 - 53027736
Alignment:
Q  197 gaccgttggatctcatcatttagcttgacattcatctcattctttgatctaat 249  Q
    ||||||||||||||||||||| |||   ||| |||||||| ||||||||||||    
T  53027788 gaccgttggatctcatcatttggctcagcatgcatctcatcctttgatctaat 53027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 35064 - 35241
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| |||  ||| ||| ||||| |||||  |   ||||||||||||    
T  35064 tcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctcat 35163  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  35164 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 35241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 29863481 - 29863304
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  ||||||||||| |   | ||||||| | ||||||| |||  ||| ||| ||||| |||||  | ||||||||||||||    
T  29863481 tcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 29863382  T
Q  213 catttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| |||   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | |||| |||||||    
T  29863381 catttggctgagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcttatgcac 29863304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 10195656 - 10195685
Alignment:
Q  116 atacttatatctaatcctaattaacattgc 145  Q
    ||||||||||||||||||||||||||||||    
T  10195656 atacttatatctaatcctaattaacattgc 10195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 741 - 832
Alignment:
Q  199 ccgttggatctcatcatttagcttgacattcatctcattctttgatctaatct--ttcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||||||||||||||||| |||   ||| |||||||| ||||||||||||||   ||||| ||||||||||||||| | ||||||||||||    
T  741 ccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatgcac 832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 33045465 - 33045374
Alignment:
Q  199 ccgttggatctcatcatttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||||||||||||||||| | |   ||| |||||||| ||||||||||||||   ||||||||||||||||||||| | ||||||||||||    
T  33045465 ccgttggatctcatcatttggttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 33045374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 3065699 - 3065802
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  ||||||| |||||   | ||||||| | ||||||| |||  ||| ||| ||||||||||  |||||||||||||||||    
T  3065699 tcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcatc 3065798  T
Q  214 attt 217  Q
    ||||    
T  3065799 attt 3065802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 8976489 - 8976543
Alignment:
Q  197 gaccgttggatctcatcatttagcttgacattcatctcattctttgatctaatct 251  Q
    |||||||||||||||| ||||||||  |||| |||||||| ||||||||||||||    
T  8976489 gaccgttggatctcattatttagctaaacatgcatctcatcctttgatctaatct 8976543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 10092637 - 10092677
Alignment:
Q  249 tctttcaaactttcaaatttgatgtctttttcctatgcacc 289  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  10092637 tctttcaaactttcaaatttgatgtatatttcctatgcacc 10092677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 27411 - 27546
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaacaaggaggaccgttggatctcatc 213  Q
    |||||||||||||||||| |  |||||||||||||     ||||||| | ||||||| |||  ||| ||| ||||||||||  | |||||||||||||||    
T  27411 tcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatc 27510  T
Q  214 atttagcttgacattcatctcattctttgatctaat 249  Q
    |||| |||   ||| |||||||| ||||||||||||    
T  27511 atttggctaagcatgcatctcatcctttgatctaat 27546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 11754 - 11577
Alignment:
Q  114 tcatacttatatctaatcctaattaacattgctaagaccattgcaaatcttaaacctgaattttttaggcaccaaa-caaggaggaccgttggatctcat 212  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||| | ||||||| | |  ||| | | ||||| |||||  | ||||||||||||||    
T  11754 tcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcat 11655  T
Q  213 catttagcttgacattcatctcattctttgatctaatctt--tcaaactttcaaatttgatgtctttttcctatgcac 288  Q
    ||||| | |   ||| |||||||| ||||||| ||||||   ||||||||||||||||||||| | ||||||||||||    
T  11654 catttggttaagcatgcatctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctatgcac 11577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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