View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2339_low_12 (Length: 369)

Name: NF2339_low_12
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2339_low_12
NF2339_low_12
[»] chr4 (1 HSPs)
chr4 (49-340)||(20712975-20713266)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 49 - 340
Target Start/End: Complemental strand, 20713266 - 20712975
Alignment:
Q  49 cagagaatgggaggtagcgttccttcgttgttagctactgatgccgcgtcttgtgtttcggttgctgaaaggatgatcgcgcttggtactcaggctggga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20713266 cagagaatgggaggtagcgttccttcgttgttagctactgatgccgcgtcttgtgtttcggttgctgaaaggatgatcgcgcttggtactcaggctggga 20713167  T
Q  149 ctattcatattcttgattttctcgggaatcaggtttgttagcattgcattgattcgttgtttatcgtcgaaagttcaataattgtggtgaatttgtagta 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20713166 ctattcatattcttgattttctcgggaatcaggtttgttagcattgcattgattcgttgtttatcgtcgaaagttcaataattgtggtgaatttatagta 20713067  T
Q  249 ttttgattaaattggagttagttagatcaaatttgaagaagtaattgatcaaatcaaagtatgtttagattaagaaaaattattgtgttttt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20713066 ttttgattaaattggagttagttagatcaaatttgaagaagtaattgatcaaatcaaagtatgtttagattaagaaaaattattgtgttttt 20712975  T

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