View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_16 (Length: 322)
Name: NF2339_low_16
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 9442020 - 9441737
Alignment:
| Q |
10 |
ccacagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaag |
109 |
Q |
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| T |
9442020 |
ccacagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaag |
9441921 |
T |
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| Q |
110 |
ccgagaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctatgcaggcat |
209 |
Q |
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| T |
9441920 |
ccgagaaggcagaggatggcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctacgcaggcat |
9441821 |
T |
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| Q |
210 |
cactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgc |
293 |
Q |
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| T |
9441820 |
cactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgc |
9441737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 9453248 - 9452968
Alignment:
| Q |
13 |
cagagcaaggaagaggaagcaaagcaaattctgtcgaaaatctatcgaccgggagaagttgaagaggagatgaaagccatgcatgaatccattgaagccg |
112 |
Q |
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| T |
9453248 |
cagagcaaggaggaggaagcaaagattattctgacaaaaatctatcgccccggtgaagttgcagacgaaatgaaagccatgcatgaatccattgaagccg |
9453149 |
T |
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| Q |
113 |
agaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacgtagttcgaagaggactctatgcaggcatcac |
212 |
Q |
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| T |
9453148 |
agaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatgacgtagttcgaagaggactctacgcaggcattac |
9453049 |
T |
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| Q |
213 |
tgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtttgctggaattgc |
293 |
Q |
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| T |
9453048 |
tgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttcagtttgcaggaattgc |
9452968 |
T |
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