View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_17 (Length: 310)
Name: NF2339_low_17
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 28 - 304
Target Start/End: Complemental strand, 38556703 - 38556427
Alignment:
| Q |
28 |
gaggccgccaatgcttatgttgtctagacaatcagcccatggcatcaatggctgttgaacgctgcaactttcttttggctcgttatcctagttagaatga |
127 |
Q |
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| T |
38556703 |
gaggccgccaatgcttatgttgtctagacaatcagcccatggcatcaatggctgttgaacgctgcaactttcttttggctcgttatcctagttagaatga |
38556604 |
T |
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| Q |
128 |
aacaaacatgattacagacgaaacaagcatgattataaaacannnnnnnatgaaatgtactggatttgagttttttattataacatgggctacattttaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38556603 |
aacaaacatgattacagacgaaacaagcatgattataaaacatttttttatgaaatgtactggatttgagttttttattataacatgggctacattttaa |
38556504 |
T |
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| Q |
228 |
ctgatagaggagtggtactcagaattcagtttaaaattcaggaccgaccaccaactgatttctccaacctatgatac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
38556503 |
ctgatagaggagtggtactcagaattcagtttaaaattcaggaccgaccaccaactgatttctccaacatgtgatac |
38556427 |
T |
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