View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_20 (Length: 284)
Name: NF2339_low_20
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_20 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 179889 - 179756
Alignment:
| Q |
138 |
tcacctttcacataaggaattataataaattctcatacagtacaataaatccaaagacaagatataaattccaacagaaagaagccaaaattgaactgca |
237 |
Q |
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| T |
179889 |
tcacctttcacataaggaattataataaattctcatacagtacaataaatccaa-gacaagatataaattccaacagaaagaagccaaaattgaactgca |
179791 |
T |
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| Q |
238 |
tcagcttttatgttctcaaatcccaacatgagtat |
272 |
Q |
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| T |
179790 |
tcagcttttatgttctcaaatcccaacatgagtat |
179756 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 179937 - 179909
Alignment:
| Q |
90 |
accataataaaatcatctttcaatgcacc |
118 |
Q |
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| T |
179937 |
accataataaaatcatctttcaatgcacc |
179909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41705133 - 41705198
Alignment:
| Q |
1 |
tcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacac |
68 |
Q |
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| T |
41705133 |
tcatcacacaccactccatctacaaattcaaaaactcttctc--ctctctgtattcaagttccaacac |
41705198 |
T |
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