View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2339_low_22 (Length: 270)

Name: NF2339_low_22
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2339_low_22
NF2339_low_22
[»] chr5 (9 HSPs)
chr5 (129-238)||(26836401-26836510)
chr5 (133-238)||(4734872-4734977)
chr5 (50-129)||(34713483-34713559)
chr5 (136-225)||(22004578-22004667)
chr5 (146-218)||(19081372-19081444)
chr5 (129-176)||(30442667-30442714)
chr5 (129-171)||(32872166-32872208)
chr5 (136-173)||(36971153-36971190)
chr5 (135-195)||(29656067-29656127)
[»] chr4 (4 HSPs)
chr4 (129-238)||(21207386-21207495)
chr4 (129-238)||(50972985-50973095)
chr4 (129-185)||(17404768-17404824)
chr4 (129-187)||(41813488-41813546)
[»] chr2 (5 HSPs)
chr2 (129-235)||(1613188-1613294)
chr2 (165-236)||(24460986-24461057)
chr2 (129-194)||(2040163-2040228)
chr2 (129-173)||(12742948-12742992)
chr2 (129-173)||(23347751-23347795)
[»] chr8 (7 HSPs)
chr8 (133-238)||(24779357-24779459)
chr8 (129-225)||(1849846-1849942)
chr8 (136-173)||(8164104-8164141)
chr8 (135-173)||(15610347-15610385)
chr8 (130-171)||(14672345-14672386)
chr8 (129-173)||(27535271-27535315)
chr8 (135-210)||(33199048-33199124)
[»] chr7 (9 HSPs)
chr7 (129-225)||(13764897-13764993)
chr7 (129-194)||(11646705-11646770)
chr7 (129-173)||(26906538-26906582)
chr7 (136-206)||(6841394-6841464)
chr7 (128-173)||(44548540-44548585)
chr7 (135-206)||(7448982-7449053)
chr7 (129-171)||(1264910-1264952)
chr7 (129-171)||(48846986-48847028)
chr7 (129-169)||(39445848-39445888)
[»] scaffold0318 (1 HSPs)
scaffold0318 (129-224)||(6493-6588)
[»] scaffold0003 (2 HSPs)
scaffold0003 (135-225)||(40094-40184)
scaffold0003 (129-193)||(33478-33542)
[»] chr6 (9 HSPs)
chr6 (135-225)||(27447174-27447264)
chr6 (129-218)||(30906236-30906325)
chr6 (129-191)||(8976996-8977058)
chr6 (145-223)||(10095417-10095495)
chr6 (136-173)||(2918380-2918417)
chr6 (129-212)||(19121424-19121507)
chr6 (129-173)||(3066449-3066493)
chr6 (129-185)||(4659056-4659112)
chr6 (129-173)||(33051359-33051403)
[»] chr3 (19 HSPs)
chr3 (129-176)||(24758761-24758808)
chr3 (129-176)||(24767758-24767805)
chr3 (127-206)||(13867397-13867476)
chr3 (133-176)||(24813333-24813376)
chr3 (133-176)||(24827206-24827249)
chr3 (129-176)||(33648120-33648167)
chr3 (136-203)||(52134614-52134681)
chr3 (129-176)||(53024667-53024714)
chr3 (129-177)||(33648063-33648111)
chr3 (129-204)||(3848152-3848227)
chr3 (129-172)||(32013721-32013764)
chr3 (136-173)||(50836138-50836175)
chr3 (136-173)||(50839678-50839715)
chr3 (129-173)||(11396759-11396803)
chr3 (129-173)||(17689641-17689685)
chr3 (129-173)||(19769864-19769908)
chr3 (135-226)||(47761256-47761347)
chr3 (129-171)||(31687845-31687887)
chr3 (129-197)||(2733171-2733238)
[»] chr1 (5 HSPs)
chr1 (129-187)||(31768413-31768471)
chr1 (135-196)||(23597864-23597925)
chr1 (129-187)||(7604859-7604917)
chr1 (129-195)||(42773296-42773362)
chr1 (139-176)||(25226952-25226989)
[»] scaffold0096 (2 HSPs)
scaffold0096 (129-173)||(32686-32730)
scaffold0096 (156-206)||(32453-32503)
[»] scaffold0596 (1 HSPs)
scaffold0596 (129-173)||(1646-1690)
[»] scaffold0475 (1 HSPs)
scaffold0475 (129-185)||(6353-6409)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 26836401 - 26836510
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26836401 actaggacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 26836500  T
Q  229 tttatgtcct 238  Q
    ||||||||||    
T  26836501 tttatgtcct 26836510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 4734872 - 4734977
Alignment:
Q  133 gtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatatttta 232  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4734872 gtacttttacccgtgctaccgcccgagacattaacaatggagaagctgatatattgcaacatgatctattacatcgaaaacaaaacgattcaatatttta 4734971  T
Q  233 tgtcct 238  Q
    ||||||    
T  4734972 tgtcct 4734977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 34713483 - 34713559
Alignment:
Q  50 ttttgtgtgttatacataaccctaaactacaataatctcatgagtataccggttcaatggttagcttgatttcgattaca 129  Q
    |||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34713483 ttttgtgtgttatatataaccctaaacta---taatctcatgagtataccggttcaatggtcagcttgatttcgattaca 34713559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 22004578 - 22004667
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 225  Q
    |||||||| |||||||||||||||||||||| |||||| || || ||||||| |||||||||  ||||||| || || ||||| ||||||    
T  22004578 cttttacctgtgctaccgcccgggacattaaaaatggagaagctaatatattacaatatgattcattacatagataagaaaacaattcaa 22004667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 19081372 - 19081444
Alignment:
Q  146 tgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaac 218  Q
    |||||||| ||||| ||| ||||||||| || || |||||||||||||||||| ||||||| ||||| |||||    
T  19081372 tgctaccgtccgggtcataaacaatggagaagctaatatattgcaatatgatccattacatagaaaagaaaac 19081444  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 30442667 - 30442714
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    ||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  30442667 actaggactattacccgtgctaacgcccgggacattaaaaatggaaaa 30442714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 32872208 - 32872166
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatg 171  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  32872208 actaggacttttacccgtgctaacgcccgggacattaaaaatg 32872166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 36971190 - 36971153
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  36971190 cttttacccgtgctaccgcccgggatattaaaaatgga 36971153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 29656067 - 29656127
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatg 195  Q
    ||||||||||||||||||||||||| ||| ||||| ||| ||  | |||| ||||||||||    
T  29656067 acttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 29656127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 21207386 - 21207495
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  21207386 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaagctgatatattgcaatatgatttattacatcgaatacaaaacgattcaatat 21207485  T
Q  229 tttatgtcct 238  Q
    ||||||||||    
T  21207486 tttatgtcct 21207495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 50972985 - 50973095
Alignment:
Q  129 actagtacttttaccc-gtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaata 227  Q
    ||||||| |||||||| |||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  50972985 actagtaattttaccccgtgctaccgccctggacattaacattggagaagctgatatattgcaatatgatctattacatcgaagacaaaatgattcaata 50973084  T
Q  228 ttttatgtcct 238  Q
    |||||||||||    
T  50973085 ttttatgtcct 50973095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 17404768 - 17404824
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 185  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||| ||||| |||||    
T  17404768 actagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatata 17404824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 41813546 - 41813488
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 187  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| || || |||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 41813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 1613188 - 1613294
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatat 228  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| || ||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1613188 actagtacttttatccgtactaccgcccggaacattaacaattgagaagttgatatattgcaatatgatctattacatcgaaaataaaacgattcaatat 1613287  T
Q  229 tttatgt 235  Q
    |||||||    
T  1613288 tttatgt 1613294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 24461057 - 24460986
Alignment:
Q  165 aacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatattttatgtc 236  Q
    ||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24461057 aacaaaggagaagctggtatattgcaatatgatctattacatcgaaaacaaaacgattcaatattttatgtc 24460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 2040163 - 2040228
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatat 194  Q
    ||||| ||||||||||||||||||||||||| ||| || |||||| ||| | ||||||||||||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaaattaatatattgcaatat 2040228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 12742992 - 12742948
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  12742992 actaggactattacccgtgctaacgcccgggacattaaaaatgga 12742948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 23347751 - 23347795
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  23347751 actaggactattacccgtgctaacgcccgggacattaaaaatgga 23347795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 24779357 - 24779459
Alignment:
Q  133 gtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaatatttta 232  Q
    ||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |    ||||||||||||||    
T  24779357 gtacttttacccgtgctaccgcctgggacaccaacaatggagaaactgatatattgcaatatgatctattacatcgaaaatag---gattcaatatttta 24779453  T
Q  233 tgtcct 238  Q
    ||||||    
T  24779454 tgtcct 24779459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 1849846 - 1849942
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 225  Q
    ||||| || ||||||||||||||| |||||| ||| ||||||||| ||||| |||||||||||||||||| ||||||| || || ||||| ||||||    
T  1849846 actagaacatttacccgtgctaccacccgggtcataaacaatggataaactaatatattgcaatatgatccattacatagataagaaaacaattcaa 1849942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 8164141 - 8164104
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  8164141 cttttacccgtgctaccgcccgggacattaaaaatgga 8164104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 15610347 - 15610385
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  15610347 acttttacccgtgctaccgcccgggtcataaacaatgga 15610385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 14672345 - 14672386
Alignment:
Q  130 ctagtacttttacccgtgctaccgcccgggacattaacaatg 171  Q
    |||| |||||||||||||||| ||||||||||||||| ||||    
T  14672345 ctaggacttttacccgtgctaacgcccgggacattaaaaatg 14672386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 27535271 - 27535315
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||||    
T  27535271 actaggacttttacccgtgctaacgctcgggacattaaaaatgga 27535315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 33199124 - 33199048
Alignment:
Q  135 acttttacccgtgctaccgcccggga-cattaacaatggaaaaactgatatattgcaatatgatctattacatcgaa 210  Q
    |||||||||||||||| | ||||||  ||| ||||||||| ||  | ||||||||||||| |||| |||||||||||    
T  33199124 acttttacccgtgctatcacccggggtcataaacaatggagaagataatatattgcaataagatccattacatcgaa 33199048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 13764993 - 13764897
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 225  Q
    ||||| ||||||||||||||||||||||| | ||| |||||||||||| || ||||||||||||||||||||||| || || || ||||| ||||||    
T  13764993 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaatatgatctattatatagataagaaaacaattcaa 13764897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 11646705 - 11646770
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatat 194  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  11646705 actagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatatattgcaatat 11646770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 26906538 - 26906582
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  26906538 actaggacttttacccgtgctaccgcccgggacattaaaaatgga 26906582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 6841464 - 6841394
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 206  Q
    |||||||||||||||| ||||||| ||| ||||||||| || || ||||||| || ||||||| |||||||    
T  6841464 cttttacccgtgctactgcccgggtcataaacaatggagaagctaatatattacactatgatcaattacat 6841394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 44548585 - 44548540
Alignment:
Q  128 cactagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||    
T  44548585 cactagtacttttacccgtgctaccgcccgggtcataaactatgga 44548540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 7448982 - 7449053
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 206  Q
    ||||||| ||||||||||||||| | ||| ||||||||| ||  | ||||||||||||| |||| |||||||    
T  7448982 acttttatccgtgctaccgcccgagtcataaacaatggagaagttaatatattgcaataagatccattacat 7449053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 1264952 - 1264910
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatg 171  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  1264952 actaggacttttacccgtgctaacgcccgggacattaaaaatg 1264910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 48846986 - 48847028
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatg 171  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  48846986 actaggacttttacccgtgctaacgcccgggacattaaaaatg 48847028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 39445888 - 39445848
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaa 169  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  39445888 actagaacttttacccgtgctaccgcccgggtcataaacaa 39445848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 6588 - 6493
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattca 224  Q
    ||||| |||||||||||||||| |||||||| ||| | ||||||| ||||| |||||||||||||||||| ||||||| || || ||||| |||||    
T  6588 actagaacttttacccgtgctatcgcccgggtcataaccaatggagaaactaatatattgcaatatgatccattacatagataagaaaacaattca 6493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 40094 - 40184
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 225  Q
    ||||||||||||||||||||||||| ||| |||||||||||| || | ||||| ||||||||||||||| || || || ||||| ||||||    
T  40094 acttttacccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatgatctattatatagataagaaaacaattcaa 40184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 33478 - 33542
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaata 193  Q
    ||||| ||||||||||||||||||||||| | ||| |||||||||||| || |||||||||||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaata 33542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 27447264 - 27447174
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaa 225  Q
    ||||||||||||||||||||||||| ||| |||||||||||| || | ||||| ||||||||||||||| || || || ||||| ||||||    
T  27447264 acttttacccgtgctaccgcccgggtcataaacaatggaaaagctaacatattacaatatgatctattatatagataagaaaacaattcaa 27447174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 30906236 - 30906325
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaac 218  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| ||| | |||||||  ||||||||| ||||||| |||||||||||    
T  30906236 actagaacttttacccgtgctaccgcccgggtcataaacaacggagaaattaatatattataatatgatccattacatagaaaacaaaac 30906325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 8977058 - 8976996
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaa 191  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||    
T  8977058 actagaacttttacccgtgctaccgcccgggtcataaacaatggaaaagctaatatattgcaa 8976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 10095495 - 10095417
Alignment:
Q  145 gtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattc 223  Q
    ||||||||| ||||| ||| ||||||||| || || |||||||||||||||||| ||| ||| ||||| ||||| ||||    
T  10095495 gtgctaccgtccgggtcataaacaatggagaagctaatatattgcaatatgatccattgcatagaaaataaaacaattc 10095417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 2918380 - 2918417
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  2918380 cttttacccgtgctaccgcccgggacattaaaaatgga 2918417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 19121507 - 19121424
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaa 212  Q
    ||||| ||||||||||||||||||| ||||| |||  |||||||| ||  | ||||||||||||| |||  ||||||| |||||    
T  19121507 actagaacttttacccgtgctaccgtccgggtcatagacaatggagaagttaatatattgcaataagattcattacatagaaaa 19121424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 3066493 - 3066449
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||    
T  3066493 actagaacttttacccgtgctaccgcctgggtcataaacaatgga 3066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 4659056 - 4659112
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 185  Q
    ||||| ||||||||||||||||||| ||||  ||| ||||||||| ||||| |||||    
T  4659056 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 4659112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 33051359 - 33051403
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||    
T  33051359 actagaacttttatccgtgctaccgcccgggtcataaacaatgga 33051403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 24758761 - 24758808
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  24758761 actagtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24758808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 24767758 - 24767805
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  24767758 actagtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24767805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 13867397 - 13867476
Alignment:
Q  127 acactagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 206  Q
    ||||||| |||||||| ||||||||||| |||| ||| ||||||||| || || ||||||||||||| |||| |||||||    
T  13867397 acactagaacttttactcgtgctaccgctcgggtcataaacaatggagaagctaatatattgcaataagatccattacat 13867476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 24813376 - 24813333
Alignment:
Q  133 gtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24813376 gtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24813333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 24827249 - 24827206
Alignment:
Q  133 gtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24827249 gtacttttacccgtgctaccgcccgggacattaaaaatggaaaa 24827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 33648120 - 33648167
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  33648120 actagtacttttacccgtgctaccgcctgggacattaaaaatggaaaa 33648167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 52134681 - 52134614
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctatta 203  Q
    ||||||||| |||||||||||||| ||| ||||||||| || || |||||||||||||||||| ||||    
T  52134681 cttttacccatgctaccgcccgggtcataaacaatggagaagctaatatattgcaatatgatcaatta 52134614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 53024667 - 53024714
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||    
T  53024667 actagtacttttacccgtgctaccgtccgggacattaaaaatggaaaa 53024714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 33648063 - 33648111
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaa 177  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||||||    
T  33648063 actagtacttttactcgtgctaccgtccgggacattaaaaatggaaaaa 33648111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 3848227 - 3848152
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattac 204  Q
    ||||| ||||||||||||||||||| ||||| ||| ||||| ||| ||||| ||||| ||||||| |||| |||||    
T  3848227 actagaacttttacccgtgctaccgtccgggtcataaacaaaggagaaactaatatagtgcaataagatccattac 3848152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 32013721 - 32013764
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgg 172  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  32013721 actagtactattacccgtgctaccgcccgggacattaaaaatgg 32013764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 50836175 - 50836138
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  50836175 cttttacccgtgctaccgcccgggacattaaaaatgga 50836138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 50839678 - 50839715
Alignment:
Q  136 cttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  50839678 cttttacccgtgctaccgcccgggacattaaaaatgga 50839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 11396803 - 11396759
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||    
T  11396803 actagaacttttacccgtgctaccgcccgggtcataaacaatgga 11396759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 17689685 - 17689641
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  17689685 actaggacttttacccgtgctaacgcccgggacattaaaaatgga 17689641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 19769908 - 19769864
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  19769908 actagaacttttacccgtgctaacgcccgggacattaaaaatgga 19769864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 47761256 - 47761347
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgatctattacatcgaaaacaaaacgattcaat 226  Q
    ||||||| |||||||||||  |||| ||| || |||||| ||  | ||||||||||||| |||| ||||||| ||||| ||||| |||||||    
T  47761256 acttttatccgtgctaccgttcgggtcataaataatggagaagttaatatattgcaataagatccattacatagaaaataaaacaattcaat 47761347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 31687887 - 31687845
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatg 171  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||    
T  31687887 actaggacttttacccgtgctaacgcccgggacattaaaaatg 31687845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 2733171 - 2733238
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatgat 197  Q
    ||||| ||||||||||||||||| ||||||| ||| ||| |||| | |||| ||||||||||| |||||    
T  2733171 actagaacttttacccgtgctactgcccgggtcataaactatgg-agaactaatatattgcaaaatgat 2733238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 31768413 - 31768471
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 187  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| ||||| |||||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaaactaatatatt 31768471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 23597864 - 23597925
Alignment:
Q  135 acttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatga 196  Q
    |||||||||||||| |||| ||||  ||| ||||||||| ||||| ||||||||||||||||    
T  23597864 acttttacccgtgccaccgtccggctcataaacaatggagaaactaatatattgcaatatga 23597925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 7604859 - 7604917
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatatt 187  Q
    ||||| ||||||||||||||||||||||||  ||| ||||||||| || || |||||||    
T  7604859 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 7604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 42773362 - 42773296
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatatattgcaatatg 195  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||| ||  | |||| ||||||||||    
T  42773362 actagaacttttacccgtgctaccgcccgggtcataaacaaaggagaaggtaatatgttgcaatatg 42773296  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 25226989 - 25226952
Alignment:
Q  139 ttacccgtgctaccgcccgggacattaacaatggaaaa 176  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  25226989 ttacccgtgctaacgcccgggacattaaaaatggaaaa 25226952  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 32730 - 32686
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| |||||||||||||||| ||||||||||||||| ||||||    
T  32730 actaggacttttacccgtgctaacgcccgggacattaaaaatgga 32686  T

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Target: scaffold0096; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 32503 - 32453
Alignment:
Q  156 cgggacattaacaatggaaaaactgatatattgcaatatgatctattacat 206  Q
    |||| ||| ||||||||| || || ||||||||||||||||||||||||||    
T  32503 cgggtcataaacaatggagaagctaatatattgcaatatgatctattacat 32453  T

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Target: scaffold0596 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 1690 - 1646
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatgga 173  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  1690 actaggactattacccgtgctaacgcccgggacattaaaaatgga 1646  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 6353 - 6409
Alignment:
Q  129 actagtacttttacccgtgctaccgcccgggacattaacaatggaaaaactgatata 185  Q
    ||||| ||||||||||||||||||| ||||  ||| ||||||||| ||||| |||||    
T  6353 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 6409  T

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