View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2339_low_25 (Length: 259)

Name: NF2339_low_25
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2339_low_25
NF2339_low_25
[»] chr5 (11 HSPs)
chr5 (30-231)||(4062075-4062276)
chr5 (30-231)||(8128387-8128588)
chr5 (30-231)||(29865828-29866029)
chr5 (32-231)||(7332890-7333089)
chr5 (98-186)||(38015936-38016026)
chr5 (72-134)||(11537590-11537652)
chr5 (72-134)||(11561074-11561136)
chr5 (72-134)||(11508007-11508069)
chr5 (72-134)||(11515378-11515440)
chr5 (72-134)||(11522780-11522842)
chr5 (72-134)||(11530192-11530254)
[»] chr4 (4 HSPs)
chr4 (30-231)||(55049961-55050162)
chr4 (30-231)||(26289952-26290153)
chr4 (65-186)||(13228652-13228775)
chr4 (63-134)||(22681276-22681347)
[»] chr8 (13 HSPs)
chr8 (30-231)||(16313203-16313404)
chr8 (30-231)||(34800747-34800948)
chr8 (30-231)||(16249993-16250194)
chr8 (30-231)||(37251119-37251320)
chr8 (30-159)||(23525155-23525284)
chr8 (30-92)||(30369835-30369897)
chr8 (115-218)||(19263330-19263434)
chr8 (98-186)||(10901446-10901536)
chr8 (119-199)||(17871244-17871326)
chr8 (104-202)||(23283667-23283765)
chr8 (76-133)||(40260462-40260519)
chr8 (117-186)||(13756548-13756619)
chr8 (117-186)||(42797289-42797360)
[»] chr3 (5 HSPs)
chr3 (30-231)||(19817359-19817560)
chr3 (74-200)||(14044249-14044377)
chr3 (112-186)||(50331962-50332038)
chr3 (88-200)||(40056499-40056613)
chr3 (146-218)||(34854317-34854389)
[»] chr1 (4 HSPs)
chr1 (30-231)||(17006447-17006648)
chr1 (30-231)||(34159443-34159644)
chr1 (98-186)||(43387103-43387193)
chr1 (63-231)||(47783104-47783274)
[»] chr6 (9 HSPs)
chr6 (30-231)||(23410043-23410244)
chr6 (30-221)||(20872400-20872591)
chr6 (64-218)||(9452838-9452994)
chr6 (119-202)||(31737203-31737288)
chr6 (98-192)||(4031523-4031617)
chr6 (112-186)||(1599689-1599765)
chr6 (51-201)||(16707253-16707405)
chr6 (146-218)||(4791599-4791671)
chr6 (145-202)||(9450698-9450755)
[»] scaffold0012 (1 HSPs)
scaffold0012 (30-231)||(30978-31179)
[»] scaffold0268 (1 HSPs)
scaffold0268 (30-231)||(19817-20018)
[»] chr7 (2 HSPs)
chr7 (30-231)||(29912507-29912708)
chr7 (98-202)||(45406690-45406796)
[»] scaffold0119 (1 HSPs)
scaffold0119 (30-221)||(40511-40702)
[»] chr2 (5 HSPs)
chr2 (55-218)||(29651721-29651886)
chr2 (92-216)||(29977334-29977460)
chr2 (145-207)||(14903540-14903602)
chr2 (111-185)||(36729280-36729356)
chr2 (117-186)||(20106667-20106738)
[»] scaffold0284 (1 HSPs)
scaffold0284 (117-185)||(7598-7668)
[»] scaffold1005 (1 HSPs)
scaffold1005 (72-134)||(1299-1361)
[»] scaffold0050 (1 HSPs)
scaffold0050 (151-201)||(11069-11119)
[»] scaffold0380 (1 HSPs)
scaffold0380 (104-186)||(15257-15341)
[»] scaffold0216 (1 HSPs)
scaffold0216 (109-202)||(29158-29253)
[»] scaffold1743 (1 HSPs)
scaffold1743 (115-218)||(214-318)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 4062075 - 4062276
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  4062075 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatgtgcagagagtctcgtacttgagggagaaatgttaatgtgtc 4062174  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  4062175 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 4062274  T
Q  230 gt 231  Q
    ||    
T  4062275 gt 4062276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 8128588 - 8128387
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8128588 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 8128489  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||| ||| |||    
T  8128488 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacataatttcataaagtttgggttgaagat 8128389  T
Q  230 gt 231  Q
    ||    
T  8128388 gt 8128387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 29866029 - 29865828
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||    
T  29866029 tcatagctcagatcgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacatgaggaagaaatgttaatgtgtc 29865930  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||    
T  29865929 aagtgcgagttaaagtcacattggatgtaagagttgatgttgagtaacatataagtgttatgattcatatacctaatttcataaggtttggggtgaagat 29865830  T
Q  230 gt 231  Q
    ||    
T  29865829 gt 29865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 7333089 - 7332890
Alignment:
Q  32 atagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaa 131  Q
    |||||| |||| |||| | |||||||||||||||| ||||| |||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||    
T  7333089 atagctcagatcgactatctggagaagcagaattgatttatagtggtagatctcgtatgcagagagtttcgtacttgagggagaaatgttaatgtgtcaa 7332990  T
Q  132 gtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgatgt 231  Q
    ||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||    
T  7332989 gtgcgagttcaaatcacattggatgtaagagtagatattgagtaacatataagtgttacgacccatatacctaatttcataaggtttggggtgaagatgt 7332890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 38016026 - 38015936
Alignment:
Q  98 tctcgtacttgagggagaaatgttaatgtgtcaagtgcgagtt--aatgtcacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||| ||||||| ||||| |||||||||||||||||| |||||  |||  ||||||| ||| || ||||||||||||| ||||||||||||    
T  38016026 tctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtg 38015936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11537652 - 11537590
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||||||||||||||||||    
T  11537652 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgttaatgtgtcaagtg 11537590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11561136 - 11561074
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||||||||||||||||||    
T  11561136 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgttaatgtgtcaagtg 11561074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11508069 - 11508007
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||| ||||||||||||||    
T  11508069 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgctaatgtgtcaagtg 11508007  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11515440 - 11515378
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||| ||||||||||||||    
T  11515440 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgctaatgtgtcaagtg 11515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11522842 - 11522780
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||| ||||||||||||||    
T  11522842 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgctaatgtgtcaagtg 11522780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 11530254 - 11530192
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||| ||||||||||||||    
T  11530254 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgctaatgtgtcaagtg 11530192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 55049961 - 55050162
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  55049961 tcatagcttagattgactctgtggagaagcagaattggtttacggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 55050060  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  55050061 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 55050160  T
Q  230 gt 231  Q
    ||    
T  55050161 gt 55050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 26290153 - 26289952
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||| ||||||||||    
T  26290153 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcctactttagggagaaatattaatgtgtc 26290054  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||    
T  26290053 aagtgcgagttaaagtcacattgtatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttgggttgaagat 26289954  T
Q  230 gt 231  Q
    ||    
T  26289953 gt 26289952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 13228652 - 13228775
Alignment:
Q  65 tggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagtt--aatgtcacattggatgtaagag 162  Q
    |||||| ||||||| |||| || |  || ||| |||| ||||| | ||||| |||||||||||||||||| |||||  |||  ||||||| ||| || ||    
T  13228652 tggtttttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatag 13228751  T
Q  163 tagatgttgagtaacatataagtg 186  Q
    ||||||||||| ||||||||||||    
T  13228752 tagatgttgagaaacatataagtg 13228775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 22681347 - 22681276
Alignment:
Q  63 attggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||| ||| ||||||| | || ||||||| | |||||||||| ||| | ||||||||||||||||||||    
T  22681347 attggttcatgatggtagaccacagatgcagagagtctcgtacttaaggaataaatgttaatgtgtcaagtg 22681276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 16313404 - 16313203
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16313404 tcatagctcagatcgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 16313305  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  16313304 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 16313205  T
Q  230 gt 231  Q
    ||    
T  16313204 gt 16313203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 34800747 - 34800948
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34800747 tcatagctcatatcgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 34800846  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  34800847 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 34800946  T
Q  230 gt 231  Q
    ||    
T  34800947 gt 34800948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 16250194 - 16249993
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  16250194 tcatagctcagatcgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagaatctcgtacttgaggaagaaatgttaatgtgtc 16250095  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||    
T  16250094 aagtgcgagataaagtcacattggatgtaagagtagatgttgagtaacatataagtattatgatccatatacctaatttcataaggtttggggtgaagat 16249995  T
Q  230 gt 231  Q
    ||    
T  16249994 gt 16249993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 37251320 - 37251119
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| | || |||| | |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  37251320 tcatagctaaaatagactatatggagaagcaaaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 37251221  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||    
T  37251220 aagtgcgagttaaagtcacattggatgtaagagtagatattgagtaacatataagtgttatgatccatacacctaatttcataaggtttggggtgaagat 37251121  T
Q  230 gt 231  Q
    ||    
T  37251120 gt 37251119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 23525155 - 23525284
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23525155 tcatagctcagatcgactctgtgaagaagcataattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 23525254  T
Q  130 aagtgcgagttaatgtcacattggatgtaa 159  Q
    ||||||||||||| ||||||||||||||||    
T  23525255 aagtgcgagttaaagtcacattggatgtaa 23525284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 30369897 - 30369835
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgca 92  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30369897 tcatagcttaaattgactctgtggagaagcagaattggtttatggtggtagatctcatatgca 30369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 19263434 - 19263330
Alignment:
Q  115 aaatgttaatgtgtcaagtgcgagttaa-tgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataa 213  Q
    |||||||||||||||||||| ||||||| | || ||||||||| |||||||   |||||  |||| ||||||| |||||  |||||||| ||| || |||    
T  19263434 aaatgttaatgtgtcaagtgtgagttaagtctcgcattggatgcaagagtaaccgttgaacaacaaataagtgatatgactcatatacctaatgtcttaa 19263335  T
Q  214 ggttt 218  Q
    |||||    
T  19263334 ggttt 19263330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 10901536 - 10901446
Alignment:
Q  98 tctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||||||||| | ||||| |||||||||| |||| || |||||||  |  ||||||| ||| || |||||||||||||||||||| |||||    
T  10901536 tctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtg 10901446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 17871244 - 17871326
Alignment:
Q  119 gttaatgtgtcaagtgcgagttaatgtc--acattggatgtaagagtagatgttgagtaacatataagtgttatgatccatat 199  Q
    |||||||||||||||| ||||||| ||   |||||| ||||||||||| || ||||| ||||||||||  |||| ||||||||    
T  17871244 gttaatgtgtcaagtgtgagttaaagttttacattgaatgtaagagtaaatattgagcaacatataagcattataatccatat 17871326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 23283667 - 23283765
Alignment:
Q  104 acttgagggagaaatgttaatgtgtcaagtgcgagttaa--tgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatac 201  Q
    ||||| ||||||||||||||||||||||||  |||||||  | ||||||||||||  |||| | || ||||| ||||||||| || ||||| | ||||||    
T  23283667 acttgcgggagaaatgttaatgtgtcaagt--gagttaaagtttcacattggatgctagagcaaatattgagcaacatataaatgatatgaccaatatac 23283764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 40260462 - 40260519
Alignment:
Q  76 ggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagt 133  Q
    |||||||| || ||||||| | |||| ||||||||| ||| |||||||||||||||||    
T  40260462 ggtagatcacaaatgcagagagtctcatacttgaggaagagatgttaatgtgtcaagt 40260519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 13756548 - 13756619
Alignment:
Q  117 atgttaatgtgtcaagtgcgagtt--aatgtcacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||||||||||||||||| |||||  |||  ||||||| ||| || ||||||||||||| ||||| ||||||    
T  13756548 atgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtg 13756619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 42797360 - 42797289
Alignment:
Q  117 atgttaatgtgtcaagtgcgagtt--aatgtcacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||||||||||||||||| |||||  |||  ||||||| ||| || |||| |||||||| ||||||||||||    
T  42797360 atgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtg 42797289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 19817560 - 19817359
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  19817560 tcatagctcagatcgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 19817461  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  19817460 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 19817361  T
Q  230 gt 231  Q
    ||    
T  19817360 gt 19817359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 14044249 - 14044377
Alignment:
Q  74 gtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttg 171  Q
    |||||||||  || ||||| ||| |||| |||||||| || | |||||||||||||||||| || |||| ||  || |||||||| || |||| ||||||    
T  14044249 gtggtagattacaaatgcaaaaagtctcatacttgagagaaagatgttaatgtgtcaagtgtgatttaaagttccatattggatgcaatagtaaatgttg 14044348  T
Q  172 agtaacatataagtgttatgatccatata 200  Q
    |  ||||| |||||| ||||| |||||||    
T  14044349 aacaacatttaagtgatatgacccatata 14044377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 50332038 - 50331962
Alignment:
Q  112 gagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||| |||||||||||||||||| |||||||  |  ||||||| ||| || ||||||||||||| ||||||||||||    
T  50332038 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtg 50331962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 40056499 - 40056613
Alignment:
Q  88 atgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagt 185  Q
    ||||||| | |||| |||||||| || | ||||||| |||||||||| || |||| ||  ||||||||||| || | ||||||||||  |||||||||||    
T  40056499 atgcagagagtctcatacttgagagaaagatgttaacgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagt 40056598  T
Q  186 gttatgatccatata 200  Q
    | ||| | |||||||    
T  40056599 gatataacccatata 40056613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 34854389 - 34854317
Alignment:
Q  146 cacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggttt 218  Q
    |||||||||||  | |||| ||||| || |||||||||||| |||||||||||| |  |||||| ||||||||    
T  34854389 cacattggatgcgatagtaaatgtttagcaacatataagtgatatgatccatatgcttaatttcttaaggttt 34854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 17006648 - 17006447
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17006648 tcatagcttatattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 17006549  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||    
T  17006548 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttgggttgaagat 17006449  T
Q  230 gt 231  Q
    ||    
T  17006448 gt 17006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 34159443 - 34159644
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  34159443 tcatagcttagattgactctgtggagaagcaaaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 34159542  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||    
T  34159543 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcacaaggtttggggtgaagat 34159642  T
Q  230 gt 231  Q
    ||    
T  34159643 gt 34159644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 43387193 - 43387103
Alignment:
Q  98 tctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||||||||| |  |||| |||||||||||||||||| |||||||  |  ||||||| ||| || ||||||||||||| ||||||||||||    
T  43387193 tctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtg 43387103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 47783104 - 47783274
Alignment:
Q  63 attggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaa--tgtcacattggatgtaag 160  Q
    ||||||| ||| ||||| ||| || |||| || | ||||||| || ||| | | |||||||||||||||||| |||||||  | ||||||||| || |||    
T  47783104 attggttaatgatggtatatcacagatgcggagagtctcgtatttaaggaatagatgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaag 47783203  T
Q  161 agtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgatgt 231  Q
    ||||  |||| |  |||||||||||| |||||  |||||||  |||  | |||||||| |||||| |||||    
T  47783204 agtaattgtttaacaacatataagtgatatgactcatatacataatgccttaaggtttagggtgaagatgt 47783274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 23410244 - 23410043
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23410244 tcatagctcagatcgactatgtggagaagcagaattgatttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 23410145  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  23410144 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 23410045  T
Q  230 gt 231  Q
    ||    
T  23410044 gt 23410043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 20872400 - 20872591
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||    
T  20872400 tcatagctcagatcgactatgtggaaaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaacgtgtc 20872499  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggg 221  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  20872500 aagtgtgagttaaagtcacattggatgtaagagtagatgttgagtagcatataagtgttatgatccatatacctaatttcataaggtttggg 20872591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 9452994 - 9452838
Alignment:
Q  64 ttggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaaga 161  Q
    ||||||||||||||||||||||   ||  || | ||||||| ||||| ||||||| ||||||| ||||||||||||||| ||  || |||||||| |||     
T  9452994 ttggtttatggtggtagatctcggttgtggagagtctcgtatttgagagagaaatattaatgtatcaagtgcgagttaaagttccaaattggatgcaagc 9452895  T
Q  162 gtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggttt 218  Q
    || |||||||||||||||||||||| ||||| ||||||| | |||||| ||||||||    
T  9452894 gtcgatgttgagtaacatataagtgatatgacccatatatctaatttcttaaggttt 9452838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 31737288 - 31737203
Alignment:
Q  119 gttaatgtgtcaagtgcgagttaa--tgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacc 202  Q
    ||||||||||||| || |||||||  | |||||||||||| |||||||||||||||  |||||| ||||| |||||| ||||||||    
T  31737288 gttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacc 31737203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 4031523 - 4031617
Alignment:
Q  98 tctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtgttatga 192  Q
    |||| ||||| ||| ||| ||||||||||||||||||  |||||| ||  |||||| ||| ||||||| ||||||||| |||||||||||| |||||    
T  4031523 tctcatacttaaggaagagatgttaatgtgtcaagtg--agttaaggttccacattagatataagagtggatgttgagcaacatataagtgatatga 4031617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 1599689 - 1599765
Alignment:
Q  112 gagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||| |||||||||||||||||| |||||||  |  ||||||| ||| || ||||||||||||| ||||||||||||    
T  1599689 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtg 1599765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 16707253 - 16707405
Alignment:
Q  51 tggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cac 148  Q
    ||||||||||||| |||||  |||||||||||||   ||| |||   |||| |||||||   | | |||||||||||||||  | ||||| | ||  |||    
T  16707253 tggagaagcagaagtggttcttggtggtagatctaggatgtagagggtctcatacttgaataaaagatgttaatgtgtcaaacgtgagttgaagtttcac 16707352  T
Q  149 attggatgtaagagtagatgttgagtaacatataagtgttatgatccatatac 201  Q
    |||||| ||||||||| |||||||  |||||||||||  ||||||||||||||    
T  16707353 attggaagtaagagtaaatgttgataaacatataagtaatatgatccatatac 16707405  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 4791671 - 4791599
Alignment:
Q  146 cacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggttt 218  Q
    |||||||||||  | |||| |||||||| |||||||||||| |||||||||||| |  |||||| ||||||||    
T  4791671 cacattggatgcgatagtaaatgttgagcaacatataagtgatatgatccatatgcttaatttcttaaggttt 4791599  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 9450755 - 9450698
Alignment:
Q  145 tcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacc 202  Q
    |||||||||||| ||||||||||| |||| || |||||||||  |||||| |||||||    
T  9450755 tcacattggatgaaagagtagatgatgagaaaaatataagtgaaatgatctatatacc 9450698  T

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Target: scaffold0012 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 31179 - 30978
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||| | |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  31179 tcataggtcagatcgactctgtgaagaagcataattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 31080  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  31079 aagtgcgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 30980  T
Q  230 gt 231  Q
    ||    
T  30979 gt 30978  T

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Target: scaffold0268 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 231
Target Start/End: Complemental strand, 20018 - 19817
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| | || |||| | |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  20018 tcatagctcatatcgactatctggagaagcataattggtttatggtggtagatctcatatgcagagagtctcgtacttgagggagaaatgttaatgtgtc 19919  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  19918 aagtgcgaattaaagtcacattggatgtaagagtagatattgagtaacatataagtgttatgatccatatacctaatttcataaggtttggggtgaagat 19819  T
Q  230 gt 231  Q
    ||    
T  19818 gt 19817  T

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Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 29912507 - 29912708
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    ||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||    
T  29912507 tcatatctcagatcgactatgtggagaagcagaattggtttatggtggtagatctcatatgcagagagtctcgtacttgagagagaaatgttaatgcgtc 29912606  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggggtgatgat 229  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||    
T  29912607 aagtgtgagttaaagtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataagatttggggtgaagat 29912706  T
Q  230 gt 231  Q
    ||    
T  29912707 gt 29912708  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 45406690 - 45406796
Alignment:
Q  98 tctcgtacttgagggagaaatgttaatgtgtcaagtgcgagtt--aatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatcc 195  Q
    |||| ||||| | ||||||||||||||||||||| || |||||  ||| | ||||| |||||||||| |||||||||| ||||||| || |  || ||||    
T  45406690 tctcatacttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgagaaacatatgagggagattatcc 45406789  T
Q  196 atatacc 202  Q
    |||||||    
T  45406790 atatacc 45406796  T

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Target: scaffold0119 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 40511 - 40702
Alignment:
Q  30 tcatagcttagattgactctgtggagaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtc 129  Q
    |||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||    
T  40511 tcatagctcagatcgactatgtggaaaagcagaattggtttatggtggtagatctcatatgcggagagtctcgtacttgagggagaaatgttaacgtgtc 40610  T
Q  130 aagtgcgagttaatgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggtttggg 221  Q
    || || ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  40611 aaatgtgagttaaagtcacattggatgtaagaatagatgttgagtaagatataagtgttatgatccatatacctaatttcataaggtttggg 40702  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 29651721 - 29651886
Alignment:
Q  55 gaagcagaattggtttatggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattg 152  Q
    ||||||||| |||||  | |||||| |||||| ||||| | | | || ||||||||| ||  ||||||||||||||| || ||||||| ||  |||||||    
T  29651721 gaagcagaagtggttccttgtggtatatctcaaatgcatagagtttcatacttgaggaagtgatgttaatgtgtcaaatgtgagttaaagtttcacattg 29651820  T
Q  153 gatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataaggttt 218  Q
     ||| |||||||||||||||  ||||| |||||| ||||||||||||||| |||||| ||||||||    
T  29651821 aatgcaagagtagatgttgaacaacatctaagtgatatgatccatataccaaatttcttaaggttt 29651886  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 29977460 - 29977334
Alignment:
Q  92 agaaaatctcgtacttgagggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtgtta 189  Q
    ||||| |||| || |||||||||  ||||||||||||||||||  |||||| ||  ||||||| ||| |||||| ||||||||  |||||||||||| ||    
T  29977460 agaaagtctcataattgagggagtgatgttaatgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgata 29977361  T
Q  190 tgatccatatacccaatttcataaggt 216  Q
    |||  |||||||| ||| || ||||||    
T  29977360 tgactcatatacctaatgtcttaaggt 29977334  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 14903540 - 14903602
Alignment:
Q  145 tcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatt 207  Q
    ||||| || ||||||||||||| |||||  |||||||||||| |||||| |||||||| ||||    
T  14903540 tcacaatgaatgtaagagtagacgttgaacaacatataagtgatatgattcatatacctaatt 14903602  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 36729356 - 36729280
Alignment:
Q  111 ggagaaatgttaatgtgtcaagtgcgagttaa--tgtcacattggatgtaagagtagatgttgagtaacatataagt 185  Q
    ||||| |||||||| ||||||||| |||| ||  | |||||||| ||| |||||||||||||||  |||||||||||    
T  36729356 ggagatatgttaatttgtcaagtgtgagtaaaaatttcacattgtatgcaagagtagatgttgaacaacatataagt 36729280  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 20106738 - 20106667
Alignment:
Q  117 atgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    ||||||||||||||| || ||||||| ||   |||||||||| |||||||||| |||| ||| |||||||||    
T  20106738 atgttaatgtgtcaaatgtgagttaacgttatacattggatggaagagtagattttgaataaaatataagtg 20106667  T

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Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 7668 - 7598
Alignment:
Q  117 atgttaatgtgtcaagtgcgagttaatgtca--cattggatgtaagagtagatgttgagtaacatataagt 185  Q
    ||||||||||||||| |||||||||| || |  ||||||||| |||||||||| ||||| |||||||||||    
T  7668 atgttaatgtgtcaaatgcgagttaacgttatacattggatggaagagtagattttgagcaacatataagt 7598  T

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Target: scaffold1005 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 1361 - 1299
Alignment:
Q  72 tggtggtagatctcatatgcagaaaatctcgtacttgagggagaaatgttaatgtgtcaagtg 134  Q
    ||||||||||||||| |||| || |||||| ||||| || || ||||||||||||||||||||    
T  1361 tggtggtagatctcagatgcggagaatctcatacttaagagataaatgttaatgtgtcaagtg 1299  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 11119 - 11069
Alignment:
Q  151 tggatgtaagagtagatgttgagtaacatataagtgttatgatccatatac 201  Q
    |||||| ||||||||||||||| |||||||| |||| ||||||||||||||    
T  11119 tggatgaaagagtagatgttgaataacatatcagtgatatgatccatatac 11069  T

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Target: scaffold0380 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 15257 - 15341
Alignment:
Q  104 acttgagggagaaatgttaatgtgtcaagtgcgagttaa--tgtcacattggatgtaagagtagatgttgagtaacatataagtg 186  Q
    |||||||||||||| |||||||||||||||| || ||||  | | |||||  ||||| |||||||| ||||| ||||||||||||    
T  15257 acttgagggagaaacgttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtg 15341  T

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Target: scaffold0216 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 29253 - 29158
Alignment:
Q  109 agggagaaatgttaatgtgtcaagtgcgagttaatgt--cacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacc 202  Q
    ||||||| |||||||||| |||| || ||||||| ||  ||||||||||| || |||||||||| |  ||||||||||||  |||||| |||||||    
T  29253 agggagatatgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacc 29158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 318 - 214
Alignment:
Q  115 aaatgttaatgtgtcaagtgcgagttaa-tgtcacattggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacccaatttcataa 213  Q
    |||||||||||||||||||| ||||||| | || |||||| || |||||||  ||||||  |||| ||||||| |||||  |||||| | ||| || |||    
T  318 aaatgttaatgtgtcaagtgtgagttaagtctcgcattggctgcaagagtaactgttgaacaacaaataagtgatatgactcatatatctaatgtcttaa 219  T
Q  214 ggttt 218  Q
    |||||    
T  218 ggttt 214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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