View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_3 (Length: 518)
Name: NF2339_low_3
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 207 - 450
Target Start/End: Complemental strand, 8764449 - 8764218
Alignment:
| Q |
207 |
agtagtcaagaaccgtgcttaataacactcaatcttttatttaatacttttgcatcacaatcaaggaaatattccattcttatgtattttatggtgtcta |
306 |
Q |
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| T |
8764449 |
agtagtcaagaaccgtgcttaataacactcaatctttt-------------gcatcacaatcaaggaaatattccactcttatgtattttatggtggcta |
8764363 |
T |
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| Q |
307 |
acatttattgtacatgcaaaaatatatttcatggtggctaacatttattgtattttataa-ttcaataaaactaataattcttcatttcgttattgagtt |
405 |
Q |
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| T |
8764362 |
agatttattgtacatgcaaaaatatatttcacggtggctaacatttattgtattttataatttcaataaaactaataattcttcatttcgttattgagtt |
8764263 |
T |
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| Q |
406 |
tcagttgttactgccaaagatgctcgtcatgctttgatcactctt |
450 |
Q |
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| T |
8764262 |
tcagttgttactgccaaagatgctcgtcatgctttgatcactctt |
8764218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 8764640 - 8764507
Alignment:
| Q |
13 |
aatattattacacttcccacaagtttcttgatttaattaatttctctatttctaacaattttacacataattttttctcctttgctatagcctgagattt |
112 |
Q |
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| T |
8764640 |
aatattattacacttcccacaagtttcttgatttaattaatttctct---tctaacaattttacagataattttttctcctttgctatagcctgagattt |
8764544 |
T |
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| Q |
113 |
gttataaactatcaaaagctcttatttttgcttacca |
149 |
Q |
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| T |
8764543 |
gttataaactatcaaaagctcttacttttgcttacca |
8764507 |
T |
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