View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2339_low_4 (Length: 470)

Name: NF2339_low_4
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2339_low_4
NF2339_low_4
[»] chr4 (4 HSPs)
chr4 (169-409)||(24983889-24984127)
chr4 (11-173)||(24983190-24983353)
chr4 (16-84)||(29551735-29551803)
chr4 (30-76)||(27059356-27059402)
[»] chr3 (1 HSPs)
chr3 (96-173)||(36338135-36338212)
[»] chr5 (2 HSPs)
chr5 (22-172)||(22415991-22416140)
chr5 (24-76)||(27689824-27689876)
[»] chr2 (2 HSPs)
chr2 (114-167)||(32121996-32122049)
chr2 (16-76)||(34415451-34415511)
[»] chr1 (1 HSPs)
chr1 (22-84)||(11355791-11355853)
[»] chr6 (1 HSPs)
chr6 (47-83)||(17520573-17520609)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 169 - 409
Target Start/End: Original strand, 24983889 - 24984127
Alignment:
Q  169 tgaacaactataggttgaagaatttggaagaactatattttctctctgtcatttgagcttgacatcttcctttgttttcattgttgtgagagacattttg 268  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24983889 tgaacaactatacgttcaagaatttggaagaactatattttctctctgtcatttgagcttgacatcttcctttgttatcattgttgtgagagacattttg 24983988  T
Q  269 t-gaaaacaaagaggaacatatatagctactctccatcaaataggttacacaaatagtctttgtctttcatttctaccacaaagtaaacatacaacaaat 367  Q
    | |||||||||||| |   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24983989 tagaaaacaaagagta---tatatagctactctccatcaaataggttacacaaatagtctctgtctttcatttctaccacaaagtaaacatacaacaaat 24984085  T
Q  368 ctctttttacataactattaacgtactaacatttgtttatct 409  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24984086 ctctttttacataactattaacgtactaacatttgtttatct 24984127  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 24983190 - 24983353
Alignment:
Q  11 cacagacacattaatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacatnnnnnnnn-tcatgtacctaagagtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||         |||||||||||||||||    
T  24983190 cacagacacattaatttataaaagttttagagcgtcgtggaccacagaaactgtcggtgcaatgtgcatcacataaaaaaaaatcatgtacctaagagtt 24983289  T
Q  110 ttggattttataattcgaaagttatctcaccctacaaaggacaaaatttaacacattattgaac 173  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24983290 ttggatcttataattcgaaagttatctcaccctacaaagtacaaaatttaacacattattgaac 24983353  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 29551803 - 29551735
Alignment:
Q  16 acacattaatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacat 84  Q
    ||||| |||||||| |||||||||| |||||||| ||||||  ||||||||||||||| |||| |||||    
T  29551803 acacactaatttattaaagttttagggcgtcgtgaaccacaaaaactgtcggtgcaatatgaaccacat 29551735  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 27059402 - 27059356
Alignment:
Q  30 aaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 76  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||    
T  27059402 aaaagtttttgtgcgtcgtggaccacataaactgtcggtgcaatgtg 27059356  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 36338135 - 36338212
Alignment:
Q  96 tgtacctaagagttttggattttataattcgaaagttatctcaccctacaaaggacaaaatttaacacattattgaac 173  Q
    |||| |||| |||||||||||||||||| ||||||||  |||||||||||||| || ||||||||||| |||||||||    
T  36338135 tgtatctaaaagttttggattttataatgcgaaagttccctcaccctacaaagtacgaaatttaacactttattgaac 36338212  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 22416140 - 22415991
Alignment:
Q  22 taatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacatnnnnnnnntcatgtacctaagagttttggattttata 121  Q
    ||||||||| ||||||||| |||| || |||||||  |||||||||||||||||| | |||||        || ||||| |||||||||  | |||||||    
T  22416140 taatttatagaagttttagggcgttgttgaccacataaactgtcggtgcaatgtggaccacat-aaataaatcttgtacataagagtttcaggttttata 22416042  T
Q  122 attcgaaagttatctcaccctacaaaggacaaaatttaacacattattgaa 172  Q
    || |||||  |  |||||||||||||| ||||| |||||| ||||||||||    
T  22416041 atccgaaatatccctcaccctacaaagtacaaagtttaactcattattgaa 22415991  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 27689876 - 27689824
Alignment:
Q  24 atttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 76  Q
    ||||||| ||||||| | |||||||||||||||  ||||||| ||||||||||    
T  27689876 atttatagaagtttttgtgcgtcgtggaccacaaaaactgtcagtgcaatgtg 27689824  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 32122049 - 32121996
Alignment:
Q  114 attttataattcgaaagttatctcaccctacaaaggacaaaatttaacacatta 167  Q
    ||||||||||| |||||||   ||||||||||||| ||||||||||||||||||    
T  32122049 attttataatttgaaagttccttcaccctacaaagtacaaaatttaacacatta 32121996  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 34415511 - 34415451
Alignment:
Q  16 acacattaatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtg 76  Q
    ||||| ||||||||| ||||||| | |||||||||||||||| || ||| |||||||||||    
T  34415511 acacactaatttatagaagtttttgtgcgtcgtggaccacagaaattgttggtgcaatgtg 34415451  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 11355791 - 11355853
Alignment:
Q  22 taatttataaaagttttagagcgtcgtggaccacagtaactgtcggtgcaatgtgaatcacat 84  Q
    ||||||||| ||||||||| || ||||||||||||  || |||||||| |||||| |||||||    
T  11355791 taatttatataagttttagggcatcgtggaccacataaaatgtcggtgtaatgtggatcacat 11355853  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 17520573 - 17520609
Alignment:
Q  47 gtggaccacagtaactgtcggtgcaatgtgaatcaca 83  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  17520573 gtggaccacagaaactgtcggtgcaatgtggatcaca 17520609  T

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