View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2339_low_6 (Length: 446)
Name: NF2339_low_6
Description: NF2339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2339_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 22 - 380
Target Start/End: Original strand, 2410780 - 2411125
Alignment:
| Q |
22 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
121 |
Q |
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| T |
2410780 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
2410879 |
T |
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| Q |
122 |
aattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaa |
221 |
Q |
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| T |
2410880 |
aattataggcaagaatcgattttctgacattattttgttaaga--------gcgttacagtaacacagtgttgtttttgttttggtgtt-gtaacaacaa |
2410970 |
T |
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| Q |
222 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctggtagtaagagaataaaagaaacggtattcaagggttc |
321 |
Q |
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| T |
2410971 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctg---gtaagagaataaaagaaacggtattcaagggttc |
2411067 |
T |
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| Q |
322 |
ttttcgtcatttcgaggttgaaattgggcttgaggttggtctcgacccgagaccaaatg |
380 |
Q |
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| T |
2411068 |
ttttcgtcatttcga-gttcaaattgggcttgaggttggactcgacccgagaccaaatg |
2411125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 436
Target Start/End: Original strand, 2411123 - 2411153
Alignment:
| Q |
406 |
atgatttctttttacacttctcaatatctct |
436 |
Q |
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| T |
2411123 |
atgatttctttttacacttctcaatatctct |
2411153 |
T |
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