View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2340_low_1 (Length: 494)
Name: NF2340_low_1
Description: NF2340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2340_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Complemental strand, 40280477 - 40280006
Alignment:
| Q |
9 |
agcataggaacattactcagtaactaactaaaactaatctaagctagttacttgcaaggtaagctattatagttagggttttattcttcttgcttatctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280477 |
agcataggaacattactcagtaactaactaaaactaatctaagctagttacttgcaaggtaagctattatagttagggttttattcttcttgcttatctt |
40280378 |
T |
|
| Q |
109 |
cgtgatgcaataacatatnnnnnnnttaccatgcgttcattataaattgatgttcttcaaagcttaaagtgctaattaatcacgtaagaatttaagggtt |
208 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40280377 |
cctgatgcaataacatataaaaaaattaccatgcgttcattctaaattgatgttcttaaaagcttaaagtgataattaatcacttaagaatttaagggtt |
40280278 |
T |
|
| Q |
209 |
attgataagaaacaaaggatattgaaacaaggaaattgaccaaacctacattgccaatttaaaattatttttgtaaaacttagttgtgttaacctgataa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280277 |
attgataagaaacaaaggatattgaaacaaggaaattgactaaacctacattgccaatttaaaattatttttgtaaaacttagttgtgttaacctgataa |
40280178 |
T |
|
| Q |
309 |
tgaaaaggagagaattatattctttatcattcctaatcaaattttcaattttccctaggttactaaatcaaacaaaatttcattcaacttcaaccgaatt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40280177 |
tgaaaaggagagaattatattctttatcattcctaatcaaatttgcaattttccctaggttactaaatcaagcaaaatttcattcaacttcaaccgaatt |
40280078 |
T |
|
| Q |
409 |
acaaataacttcatttgttgagcagttaagataagagagtgctaatatgcgtccttataatactttttagtg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40280077 |
acaaataacttcatttgttgagcagttaagataagagagtgctaatatgtgtccttataatactttttagtg |
40280006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 23872054 - 23872152
Alignment:
| Q |
23 |
actcagtaactaactaaaactaatctaagctagttacttgcaaggtaagctattatagttagggttttattcttcttgcttatcttcgtgatgcaataac |
122 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | || ||||||||| |||||| | || |||| ||||||||||||||||||||||||||| |
|
|
| T |
23872054 |
actcagtaactaactaaa-ctaatctaagctagttacttgtacggcaagctattacagttagagcttcattcctcttgcttatcttcgtgatgcaataac |
23872152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 394
Target Start/End: Original strand, 44008333 - 44008361
Alignment:
| Q |
366 |
ggttactaaatcaaacaaaatttcattca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44008333 |
ggttactaaatcaaacaaaatttcattca |
44008361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University