View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2341_low_1 (Length: 487)
Name: NF2341_low_1
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2341_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 2 - 472
Target Start/End: Complemental strand, 29870090 - 29869618
Alignment:
| Q |
2 |
aaaaacatatccaaaattacattcactcttgatgggnnnnnnn-gtacataaataaatagacatagaaacattatcttttgtgagtggcataagaaatgc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29870090 |
aaaaacatatctaaaattacattcactcttgatgggaaaaaaaagtacataaataaatagacatagaaacattatcttttgtgagtggcataagaaatgc |
29869991 |
T |
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| Q |
101 |
ataacacgctatcatcgagtagagtatttctcttattaatttgagattttagatggtgatgttgaatgaccttttgagtgtaggactttcaatagtaacc |
200 |
Q |
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| T |
29869990 |
ataacacgctatcatcgagtagagtatttctcttattaatttgagattttagatggtgatgttgaatgatcttttgagtgtaggactttcaatagtaacc |
29869891 |
T |
|
| Q |
201 |
tatttttt-ggattcataaggtattttaggataaaatgcatgtgtacttggaccaatcttatgagttagtatttttaggtgagtttagggttttggtcct |
299 |
Q |
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| T |
29869890 |
tatttttttggattcacaaggtatctaaggataaaatgcatgtgtacttggaccaatcttatgagttagtatttataggtgagtttagggttttggtcct |
29869791 |
T |
|
| Q |
300 |
tacactattactttgacaactatctattagggacacttgtaagcatattaaaagtagatatcattggacccgtcctagacggtcaaaattcactggtgag |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||| |
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| T |
29869790 |
tacactattactttgacaactatctattagcgacacttgtaagcatattaaaagaagatatcattggacccgttctagacagtcaaaattcactcgtgag |
29869691 |
T |
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| Q |
400 |
gccttgatacaatgatgtatagggcgtgcacatgccatggtccgcccgtgagtgagttactaagtgcaccagg |
472 |
Q |
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| T |
29869690 |
gccttgatacaatgatgtatagggtgtgcacatgccatggtccgtccgtgagtgagttactaagtgcaccagg |
29869618 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 23232166 - 23232219
Alignment:
| Q |
220 |
gtattttaggataaaatgcatgtgtacttggaccaatcttatgagttagtattt |
273 |
Q |
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|||||||||| ||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
23232166 |
gtattttagggtaaaatgtatgtgtacttagaccaatgccatgagttagtattt |
23232219 |
T |
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