View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2341_low_12 (Length: 223)
Name: NF2341_low_12
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2341_low_12 |
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| [»] chr6 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 2349292 - 2349087
Alignment:
| Q |
18 |
gaaatgagcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349292 |
gaaatgagcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaa |
2349193 |
T |
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| Q |
118 |
gcttgatagtgaatattggtccatatttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattgg |
217 |
Q |
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| T |
2349192 |
gcttgatagtgaatattggtccatatttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattgg |
2349093 |
T |
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| Q |
218 |
ccatgc |
223 |
Q |
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|||||| |
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| T |
2349092 |
ccatgc |
2349087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 2305916 - 2305717
Alignment:
| Q |
24 |
agcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttga |
123 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||| |
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| T |
2305916 |
agcttgggacgagacgaaacgaccatgtcgtgtgtagtaaaacattccttggccatttcccaattgttgagaattaaagcacgtttagaaccaagcttga |
2305817 |
T |
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| Q |
124 |
tagtgaatattggtccatatttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgc |
223 |
Q |
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| T |
2305816 |
tggtgaataatggtccatatttatcagctaaggtacctaagaccctatggggtgattgtgtgccactaaaaagtgagaggtgaccaagtattggccatgc |
2305717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 2338237 - 2338038
Alignment:
| Q |
24 |
agcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttga |
123 |
Q |
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||||| |||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2338237 |
agctttggacgagacgaaacgaccgtgtcgttcgtagtgaaacattccttggccatttcccaattgttgagtattaaagcatgtttagtgccaagcttga |
2338138 |
T |
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| Q |
124 |
tagtgaatattggtccatatttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgc |
223 |
Q |
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| T |
2338137 |
tggtgaataatggtccatatttatcagctaaggtacctaagactctatggggtgattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgc |
2338038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 2295236 - 2295121
Alignment:
| Q |
39 |
gaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtc |
138 |
Q |
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| T |
2295236 |
gaaacaactatgtcatttttggtgaaacattctttggctaattcccaattgtttagtaccaaagcatgtgtagcacctagcttgattgtgaatatgggtc |
2295137 |
T |
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| Q |
139 |
catatttatcagctaa |
154 |
Q |
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||||| | |||||||| |
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| T |
2295136 |
catatctgtcagctaa |
2295121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 2361584 - 2361481
Alignment:
| Q |
60 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatcagctaatggac |
159 |
Q |
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|||||||||||||| || |||||||||||| ||| | |||||| |||| ||||||||||| |||||||| | ||||||||||||||||| |||| || |
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| T |
2361584 |
gtgaaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatatttatcagccaatgcac |
2361485 |
T |
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| Q |
160 |
ctaa |
163 |
Q |
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|||| |
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| T |
2361484 |
ctaa |
2361481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 2366188 - 2366085
Alignment:
| Q |
60 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatcagctaatggac |
159 |
Q |
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|||||||||||||| || |||||||||||| |||| | |||||| |||| ||||||| ||| |||||||| | ||||||||||||||||| |||| || |
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| T |
2366188 |
gtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaaccaatcttaatagtgaacaagggtccatatttatcagccaatgcac |
2366089 |
T |
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| Q |
160 |
ctaa |
163 |
Q |
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|||| |
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| T |
2366088 |
ctaa |
2366085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 2355901 - 2355807
Alignment:
| Q |
60 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatatttatcagctaa |
154 |
Q |
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|||||||||||||| || |||||| ||||| |||||| ||||||| ||| |||||||| ||||| ||||| | |||||||||||||||||||| |
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| T |
2355901 |
gtgaaacattccttcgccatttccgaattgctaagtaccaaagcatttttggaaccaagtttgatggtgaacaagggtccatatttatcagctaa |
2355807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 5806057 - 5806256
Alignment:
| Q |
24 |
agcttgggacgagacgaaacaaccatgtcgtgtgtagtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttga |
123 |
Q |
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||||| |||||||||||||| | ||| || | |||||||||||||||||| || |||||||||||||| |||| ||| |||||||||| ||||||||||| |
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| T |
5806057 |
agctttggacgagacgaaacgatcatatcatttgtagtgaaacattccttagccatttcccaattgttgagtactaaggcatgtttaggaccaagcttga |
5806156 |
T |
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| Q |
124 |
tagtgaatattggtccatatttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgc |
223 |
Q |
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| T |
5806157 |
tggtgaatattggtccatgtttatcacctagggcacctaagattctatggggtgcttgtgtgccacaaaaaattgggaggtgaccaagtattggccatgc |
5806256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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