View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2341_low_2 (Length: 394)
Name: NF2341_low_2
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2341_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 40585078 - 40585445
Alignment:
| Q |
13 |
aatatattcctggagattttatttt-gtttgttcctcttctctgtttgttagtatgttgaccctacatacttgcacttttcatgttttttttagtaccat |
111 |
Q |
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| T |
40585078 |
aatatattcctggagattttatttttgtttgttcctcttctctgtttgttagtatgttgaccctacatacttgcacttttcatgttttttt-agtaccat |
40585176 |
T |
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| Q |
112 |
tgacacnnnnnnnnnng-aaaataaaaatttgaggatgcaaaattatcattaataatatgacattggtgaccattatttaaacttcgtctcttaaagtta |
210 |
Q |
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| T |
40585177 |
tgacacttttttttttttaaaataaaaatttgaggatgcaaaattatcattaataatatgacatcggtgaccattatttaaacttcgtctcttaaagtta |
40585276 |
T |
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| Q |
211 |
caaaatcaaattcttactactgaactgacatctcaagaacaaatgcatcgacactaatgatatttttatatctctagattacaaattctgagtaccattg |
310 |
Q |
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| T |
40585277 |
caaaatcaaattcttactactgaactgacatcttaagaacaaatacagtgacactaatgatatttttatatctctagattacaaattctgagtaccattg |
40585376 |
T |
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| Q |
311 |
acatatttcacttgtacaacaaaactatatac-ttttttatcaacagtgaagagtgcagccaatgttat |
378 |
Q |
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| T |
40585377 |
acatatttcacttgtacagcaaaactatatactttttttatcaacagtgaagagtgcagccaatgttat |
40585445 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 5399921 - 5399871
Alignment:
| Q |
185 |
tatttaaacttcgtctcttaaagttacaaaatcaaattcttactactgaac |
235 |
Q |
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| T |
5399921 |
tattcaaacttcgtctcttaaggttacaaagtcaaactcttaccactgaac |
5399871 |
T |
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