View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2341_low_4 (Length: 337)

Name: NF2341_low_4
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2341_low_4
NF2341_low_4
[»] chr5 (19 HSPs)
chr5 (188-289)||(24432968-24433070)
chr5 (68-122)||(16199032-16199086)
chr5 (68-129)||(38869599-38869660)
chr5 (68-128)||(27923885-27923945)
chr5 (69-128)||(40389772-40389831)
chr5 (68-128)||(7670728-7670787)
chr5 (68-109)||(9364113-9364154)
chr5 (68-116)||(16799562-16799610)
chr5 (81-117)||(28822576-28822612)
chr5 (80-119)||(15480247-15480286)
chr5 (80-119)||(19523102-19523141)
chr5 (76-119)||(30853275-30853318)
chr5 (80-119)||(31881608-31881647)
chr5 (129-171)||(26302551-26302593)
chr5 (80-118)||(34756632-34756670)
chr5 (78-119)||(16592861-16592902)
chr5 (18-50)||(7670840-7670872)
chr5 (18-50)||(16198946-16198978)
chr5 (18-50)||(40389688-40389720)
[»] chr6 (14 HSPs)
chr6 (68-130)||(17353757-17353819)
chr6 (68-123)||(27788928-27788983)
chr6 (68-130)||(20711958-20712020)
chr6 (69-130)||(235466-235527)
chr6 (68-129)||(28075587-28075648)
chr6 (80-128)||(19986966-19987014)
chr6 (80-119)||(13727667-13727706)
chr6 (80-119)||(19741241-19741280)
chr6 (80-119)||(21280342-21280381)
chr6 (80-119)||(27314782-27314821)
chr6 (81-129)||(11574446-11574494)
chr6 (18-50)||(17353873-17353905)
chr6 (18-50)||(20711875-20711907)
chr6 (80-116)||(23070907-23070943)
[»] scaffold0027 (1 HSPs)
scaffold0027 (68-132)||(4145-4209)
[»] chr7 (19 HSPs)
chr7 (68-128)||(47985208-47985268)
chr7 (72-129)||(19691896-19691953)
chr7 (68-117)||(48984083-48984132)
chr7 (68-120)||(24525924-24525976)
chr7 (68-123)||(25010258-25010313)
chr7 (68-129)||(38415114-38415175)
chr7 (68-113)||(20091520-20091565)
chr7 (80-130)||(10027616-10027666)
chr7 (68-129)||(10329649-10329710)
chr7 (80-128)||(9939443-9939491)
chr7 (80-119)||(12596447-12596486)
chr7 (129-175)||(22741194-22741240)
chr7 (80-133)||(18777036-18777089)
chr7 (80-117)||(28749592-28749629)
chr7 (68-116)||(23551311-23551359)
chr7 (80-128)||(29241547-29241595)
chr7 (79-123)||(44601391-44601435)
chr7 (79-123)||(44601559-44601603)
chr7 (79-123)||(44601727-44601771)
[»] chr4 (31 HSPs)
chr4 (68-128)||(24969242-24969302)
chr4 (68-130)||(16844825-16844887)
chr4 (69-130)||(2790981-2791042)
chr4 (69-118)||(32128402-32128451)
chr4 (68-128)||(37777465-37777525)
chr4 (68-128)||(38352495-38352554)
chr4 (68-112)||(40089340-40089384)
chr4 (68-119)||(54083484-54083535)
chr4 (80-128)||(54779441-54779489)
chr4 (80-130)||(35780574-35780624)
chr4 (68-117)||(34027399-34027448)
chr4 (80-129)||(48694709-48694758)
chr4 (80-128)||(19498313-19498361)
chr4 (80-128)||(25887302-25887350)
chr4 (80-128)||(29690951-29690999)
chr4 (79-119)||(37514567-37514607)
chr4 (18-50)||(40089437-40089469)
chr4 (80-119)||(10431460-10431499)
chr4 (70-117)||(16882635-16882682)
chr4 (80-123)||(27596657-27596700)
chr4 (80-111)||(35463958-35463989)
chr4 (80-119)||(55255089-55255128)
chr4 (80-118)||(5129001-5129039)
chr4 (79-128)||(979369-979418)
chr4 (80-128)||(3850595-3850643)
chr4 (18-50)||(24969358-24969390)
chr4 (80-128)||(31984833-31984881)
chr4 (18-50)||(34027500-34027532)
chr4 (18-50)||(38352409-38352441)
chr4 (18-50)||(43455685-43455717)
chr4 (80-116)||(45560722-45560758)
[»] chr3 (23 HSPs)
chr3 (68-128)||(53507123-53507183)
chr3 (68-130)||(43207480-43207542)
chr3 (80-129)||(9878937-9878986)
chr3 (68-129)||(44708281-44708342)
chr3 (68-128)||(48156942-48157002)
chr3 (68-128)||(50939474-50939534)
chr3 (68-128)||(34290880-34290940)
chr3 (68-123)||(54407397-54407452)
chr3 (80-132)||(50258752-50258804)
chr3 (80-119)||(3954870-3954909)
chr3 (80-119)||(36716293-36716332)
chr3 (80-119)||(38681365-38681404)
chr3 (68-111)||(48720536-48720579)
chr3 (80-119)||(54619471-54619510)
chr3 (80-118)||(27078836-27078874)
chr3 (80-118)||(27084633-27084671)
chr3 (81-119)||(29620618-29620656)
chr3 (80-121)||(1148372-1148413)
chr3 (18-50)||(9878842-9878874)
chr3 (82-130)||(11467755-11467803)
chr3 (80-116)||(25373642-25373678)
chr3 (18-50)||(43207392-43207424)
chr3 (18-50)||(48157058-48157090)
[»] chr2 (15 HSPs)
chr2 (68-128)||(26715931-26715991)
chr2 (68-137)||(24410227-24410296)
chr2 (68-128)||(9045832-9045892)
chr2 (68-128)||(27506981-27507041)
chr2 (68-128)||(10762805-10762865)
chr2 (68-107)||(8327488-8327527)
chr2 (18-50)||(10762720-10762752)
chr2 (80-119)||(3155012-3155051)
chr2 (80-119)||(4505688-4505727)
chr2 (80-119)||(6964801-6964840)
chr2 (80-119)||(7162686-7162725)
chr2 (80-130)||(52968-53018)
chr2 (80-117)||(3952910-3952947)
chr2 (80-129)||(30175518-30175567)
chr2 (80-128)||(21190944-21190992)
[»] chr8 (15 HSPs)
chr8 (68-130)||(42600582-42600644)
chr8 (68-121)||(23606861-23606914)
chr8 (68-116)||(10917206-10917254)
chr8 (68-130)||(23798501-23798563)
chr8 (83-128)||(45472191-45472236)
chr8 (80-128)||(15270143-15270191)
chr8 (80-119)||(2952490-2952529)
chr8 (80-119)||(5861013-5861052)
chr8 (80-119)||(20003894-20003933)
chr8 (129-164)||(40329263-40329298)
chr8 (80-130)||(33978672-33978722)
chr8 (80-130)||(45193876-45193926)
chr8 (80-117)||(3048791-3048828)
chr8 (79-123)||(4322502-4322546)
chr8 (18-50)||(10917307-10917339)
[»] chr1 (26 HSPs)
chr1 (68-122)||(1367117-1367171)
chr1 (68-122)||(44895473-44895527)
chr1 (68-129)||(9173261-9173322)
chr1 (68-128)||(13913722-13913782)
chr1 (68-128)||(40502030-40502090)
chr1 (68-116)||(27559459-27559507)
chr1 (83-128)||(23181711-23181756)
chr1 (68-128)||(17168769-17168829)
chr1 (68-112)||(19955547-19955591)
chr1 (79-128)||(10912111-10912160)
chr1 (80-116)||(5027992-5028028)
chr1 (129-176)||(3533031-3533078)
chr1 (80-119)||(6771705-6771744)
chr1 (80-119)||(14146214-14146253)
chr1 (80-119)||(41697297-41697336)
chr1 (80-119)||(44655548-44655587)
chr1 (68-130)||(51607679-51607741)
chr1 (82-119)||(50880577-50880614)
chr1 (18-50)||(1367032-1367064)
chr1 (80-116)||(3406335-3406371)
chr1 (80-116)||(3440449-3440485)
chr1 (80-116)||(12037601-12037637)
chr1 (18-50)||(17168883-17168915)
chr1 (18-50)||(27559564-27559596)
chr1 (80-116)||(27906966-27907002)
chr1 (18-50)||(40501944-40501976)
[»] scaffold0039 (1 HSPs)
scaffold0039 (68-128)||(106379-106439)
[»] scaffold0369 (1 HSPs)
scaffold0369 (80-128)||(14373-14421)
[»] scaffold0070 (1 HSPs)
scaffold0070 (80-119)||(1020-1059)
[»] scaffold0001 (1 HSPs)
scaffold0001 (83-119)||(181444-181480)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 24432968 - 24433070
Alignment:
Q  188 atggttgtccttttgaactattttatcggcaatcaacaattaaaatggacagaacaagtttcagaagctggcaaaggtaa-agagagatcaagaatgtgg 286  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||||| |||||||||||| ||||||    
T  24432968 atggttgtccttttgaactattttatcagcaatcaacaattaaaatggacagtacaagtttcagaagctgctaaaggtaagagagagatcaaggatgtgg 24433067  T
Q  287 acc 289  Q
    |||    
T  24433068 acc 24433070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 16199032 - 16199086
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccg 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16199032 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccg 16199086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 38869599 - 38869660
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  38869599 cccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 27923945 - 27923885
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  27923945 cccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 40389772 - 40389831
Alignment:
Q  69 ccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  40389772 ccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 7670787 - 7670728
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  7670787 cccatgactgagggaggcccaactctgttgagctgtttgca-cccctcagggccgggcctg 7670728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 9364154 - 9364113
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcac 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  9364154 cccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 16799562 - 16799610
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  16799562 cccatgactgagggaggcctagctctattgagctgtttgcaccccctca 16799610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 28822576 - 28822612
Alignment:
Q  81 gaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28822576 gaggcccaactctgttgagctgtttgcaccccctcag 28822612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 15480247 - 15480286
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  15480247 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 15480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 19523141 - 19523102
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  19523141 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 19523102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 30853318 - 30853275
Alignment:
Q  76 tgaaggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||||||  |||||||||||||||||||| ||||    
T  30853318 tgaaggaggcccagctcgtttgagctgtttgcaccccctaaggg 30853275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 31881608 - 31881647
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  31881608 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 31881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 26302551 - 26302593
Alignment:
Q  129 ataataatgcattgttctactaaccgagctatgctcccggaac 171  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||    
T  26302551 ataataatgcattgtcctaccaaccgagctatgctcacggaac 26302593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 34756632 - 34756670
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagg 118  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  34756632 ggaggcccagctcgtttgagctgtttgcaccccctcagg 34756670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 16592861 - 16592902
Alignment:
Q  78 aaggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  16592861 aaggaggtccagctcgtttgagctgtttgcaccccctcaggg 16592902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 7670872 - 7670840
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  7670872 aaaacaaggggacagaaaatggctgggggtatt 7670840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 16198946 - 16198978
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  16198946 aaaacaaggggacagaaaatggctgggggtatt 16198978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 40389688 - 40389720
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  40389688 aaaacaaggggacagaaaatggctgggggtatt 40389720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 17353819 - 17353757
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17353819 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgat 17353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 27788928 - 27788983
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27788928 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgg 27788983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 20711958 - 20712020
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  20711958 cccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 235466 - 235527
Alignment:
Q  69 ccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  235466 ccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgat 235527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 28075648 - 28075587
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||    
T  28075648 cccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 19987014 - 19986966
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  19987014 ggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 13727667 - 13727706
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  13727667 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 13727706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 19741241 - 19741280
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  19741241 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 19741280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 21280381 - 21280342
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  21280381 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 21280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 27314782 - 27314821
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  27314782 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 27314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 11574494 - 11574446
Alignment:
Q  81 gaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    |||||||||||| || |||||||||||||||||||| || ||| |||||    
T  11574494 gaggcccagctcagtagagctgtttgcaccccctcaaggacggtcctga 11574446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17353905 - 17353873
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  17353905 aaaacaaggggacagaaaatggctgggggtatt 17353873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 20711875 - 20711907
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  20711875 aaaacaaggggacagaaaatggctgggggtatt 20711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 23070907 - 23070943
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    |||||||||||||  ||||||||||||||||||||||    
T  23070907 ggaggcccagctcgtttgagctgtttgcaccccctca 23070943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 4209 - 4145
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgataa 132  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  4209 cccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgataa 4145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 47985208 - 47985268
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47985208 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 19691953 - 19691896
Alignment:
Q  72 tgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  19691953 tgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 48984083 - 48984132
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48984083 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcag 48984132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 24525924 - 24525976
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggc 120  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  24525924 cccatgactaagggaggcccagctctgttgagctgtttgcaccccctcagggc 24525976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 25010313 - 25010258
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  25010313 cccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgg 25010258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 38415114 - 38415175
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  38415114 cccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 20091520 - 20091565
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccc 113  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  20091520 cccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 10027666 - 10027616
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||||    
T  10027666 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctgat 10027616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 10329649 - 10329710
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||| |||| || ||| ||||||| ||||||||||||||||||| |||| |||||    
T  10329649 cccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 9939443 - 9939491
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  9939443 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 9939491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 12596447 - 12596486
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  12596447 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 12596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 22741240 - 22741194
Alignment:
Q  129 ataataatgcattgttctactaaccgagctatgctcccggaactatt 175  Q
    ||||||||||||||| |||| ||||||||||||||| ||| ||||||    
T  22741240 ataataatgcattgtcctaccaaccgagctatgctcacgggactatt 22741194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 18777036 - 18777089
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgataat 133  Q
    |||||||||||||  |||||||||||||||| |||||||| ||  |||||||||    
T  18777036 ggaggcccagctcgtttgagctgtttgcacctcctcagggacgcccctgataat 18777089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 28749629 - 28749592
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    |||||||||||||  |||||||||||||||||||||||    
T  28749629 ggaggcccagctcgtttgagctgtttgcaccccctcag 28749592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 23551311 - 23551359
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||| ||| ||||| ||| |||| ||||||||||||||||||||||    
T  23551311 cccatgattgagggaggtccaactctattgagctgtttgcaccccctca 23551359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 29241547 - 29241595
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || || |||||| ||||    
T  29241547 ggaggcccagctctgtagagctgtttgcacctccccaaggccggccctg 29241595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 44601435 - 44601391
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||||    
T  44601435 aggaggtccagctctattgagatgtttgcaccccctcaaggccgg 44601391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 44601603 - 44601559
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||||    
T  44601603 aggaggtccagctctattgagatgtttgcaccccctcaaggccgg 44601559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 44601771 - 44601727
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    |||||| |||||||| ||||| |||||||||||||||| ||||||    
T  44601771 aggaggtccagctctattgagatgtttgcaccccctcaaggccgg 44601727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 24969302 - 24969242
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24969302 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggctggacctg 24969242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 16844887 - 16844825
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  16844887 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 16844825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 2790981 - 2791042
Alignment:
Q  69 ccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||| | ||| ||||||    
T  2790981 ccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgat 2791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 32128451 - 32128402
Alignment:
Q  69 ccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagg 118  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  32128451 ccataactgagggaggcccagctctgttgagctgtttgcaccccctcagg 32128402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 37777465 - 37777525
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  37777465 cccatgattgagggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctg 37777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 38352495 - 38352554
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  38352495 cccatgactaagggaggcccagctctgttgagctgtttgca-cccctcagggccgggcctg 38352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 40089384 - 40089340
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcacccc 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  40089384 cccatgactgagggaggcccagctctgttgagctgtttgcacccc 40089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 54083484 - 54083535
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  54083484 cccatgactgagggatgcccagctctattgagctgtttgcaccccctcaggg 54083535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 54779489 - 54779441
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||    
T  54779489 ggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 35780574 - 35780624
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||||| |||||||||||||||||||||| | ||||| ||||||    
T  35780574 ggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctgat 35780624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 34027448 - 34027399
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    ||||||||||| |||| |||||||||||||||| |||||||| |||||||    
T  34027448 cccatgactgagggagacccagctctgttgagcagtttgcactccctcag 34027399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 48694758 - 48694709
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    |||||||||||||||| |||||||||||||| || ||||||||| |||||    
T  48694758 ggaggcccagctctgtagagctgtttgcacctccccagggccggtcctga 48694709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 19498361 - 19498313
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||| |||||||||| |||||||||| ||||    
T  19498361 ggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 25887302 - 25887350
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  25887302 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 25887350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 29690951 - 29690999
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  29690951 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 29690999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 37514607 - 37514567
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  37514607 aggaggcccagctcgtttgagctgtttgcaccccctcaggg 37514567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40089469 - 40089437
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  40089469 aaaacaaggggacagaaaatggctgagggtatt 40089437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 10431460 - 10431499
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  10431460 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 10431499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 16882635 - 16882682
Alignment:
Q  70 catgactgaaggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    ||||||| | ||| ||||||||||||||||||||||||||| ||||||    
T  16882635 catgactaagggaagcccagctctgttgagctgtttgcacctcctcag 16882682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 27596657 - 27596700
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    |||||||||||||  |||||||||| ||||||||||||||||||    
T  27596657 ggaggcccagctcgtttgagctgttcgcaccccctcagggccgg 27596700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 35463989 - 35463958
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccc 111  Q
    ||||||||||||||||||||||||||||||||    
T  35463989 ggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 55255128 - 55255089
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  55255128 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 55255089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 5129001 - 5129039
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagg 118  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  5129001 ggaggcccagctcgtttgagctgtttgcaccccctcagg 5129039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 979418 - 979369
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||| || |||||||||||||||||| | |||||| ||||    
T  979418 aggaggcccagctcagtagagctgtttgcacccccttaaggccggccctg 979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 3850643 - 3850595
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||| ||||    
T  3850643 ggaggcccagctcagtatagctgtttgcaccccctcatggccggccctg 3850595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 24969390 - 24969358
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  24969390 aaaacaaggggacagaaaatggctgggggtatt 24969358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 31984833 - 31984881
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||| |||| || |||||||||||||||||||| |||||| ||||    
T  31984833 ggaggcccggctcagtagagctgtttgcaccccctcaaggccggccctg 31984881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 34027532 - 34027500
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  34027532 aaaacaaggggacagaaaatggctgggggtatt 34027500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38352409 - 38352441
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  38352409 aaaacaaggggacagaaaatggctgggggtatt 38352441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 43455685 - 43455717
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  43455685 aaaacaaggggacagaaaatggctgggggtatt 43455717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 45560722 - 45560758
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    |||||||||||||  ||||||||||||||||||||||    
T  45560722 ggaggcccagctcgtttgagctgtttgcaccccctca 45560758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 53507123 - 53507183
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53507123 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 43207480 - 43207542
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  43207480 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgat 43207542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 9878937 - 9878986
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9878937 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 44708342 - 44708281
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  44708342 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 48157002 - 48156942
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48157002 cccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 50939474 - 50939534
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  50939474 cccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 34290880 - 34290940
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  34290880 cccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 54407397 - 54407452
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||    
T  54407397 cccatgactgagggaggcccaactctgttgagctgtttgcacctcctcaggaccgg 54407452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 50258752 - 50258804
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgataa 132  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  ||||||||    
T  50258752 ggaggcccagctcatttgagctgtttgcaccccctcagggacgcccctgataa 50258804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 3954870 - 3954909
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  3954870 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 3954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 36716293 - 36716332
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  36716293 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 36716332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 38681365 - 38681404
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  38681365 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 38681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 48720536 - 48720579
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccc 111  Q
    ||||||||||| ||| || |||||||||||||||||||||||||    
T  48720536 cccatgactgagggaagctcagctctgttgagctgtttgcaccc 48720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 54619471 - 54619510
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  54619471 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 54619510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 27078836 - 27078874
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagg 118  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27078836 ggaggcccagctcgtttgagctgtttgcaccccctcagg 27078874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 27084633 - 27084671
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagg 118  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27084633 ggaggcccagctcgtttgagctgtttgcaccccctcagg 27084671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 29620618 - 29620656
Alignment:
Q  81 gaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  29620618 gaggcccagctcgtttgagctgtttgcaccccctcaggg 29620656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 1148372 - 1148413
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggcc 121  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  1148372 ggaggcccagctcgtttgagctgttcgcaccccctcagggcc 1148413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 9878842 - 9878874
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  9878842 aaaacaaggggacagaaaatggctgggggtatt 9878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 11467803 - 11467755
Alignment:
Q  82 aggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| || |||||||||||||||||||| |||| | ||||||    
T  11467803 aggcccagctcagtagagctgtttgcaccccctcatggccagccctgat 11467755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 25373642 - 25373678
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||||||||| || ||||||||||||||||||||    
T  25373642 ggaggcccagctcagtagagctgtttgcaccccctca 25373678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 43207392 - 43207424
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  43207392 aaaacaaggggacagaaaatggctgggggtatt 43207424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48157090 - 48157058
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  48157090 aaaacaaggggacagaaaatggctgggggtatt 48157058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 26715991 - 26715931
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26715991 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 24410296 - 24410227
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgataataatg 137  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||    
T  24410296 cccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgatagtaatg 24410227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 9045892 - 9045832
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9045892 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctg 9045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 27506981 - 27507041
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  27506981 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 10762805 - 10762865
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||    
T  10762805 cccatgattgagggaagcccagctctgttgagctgtttgcatcccctcagggccggccctg 10762865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 8327527 - 8327488
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgc 107  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  8327527 cccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 10762720 - 10762752
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  10762720 aaaacaaggggacagaaaatggctgagggtatt 10762752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 3155051 - 3155012
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  3155051 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 3155012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 4505727 - 4505688
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  4505727 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 4505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 6964840 - 6964801
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  6964840 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 6964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 7162725 - 7162686
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  7162725 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 7162686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 52968 - 53018
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||||| || |||||| |||||||||||||||| ||| ||||||    
T  52968 ggaggcccagctcagtagagctgcttgcaccccctcagggtcggccctgat 53018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 3952947 - 3952910
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    |||||||||||||  |||||||||||||||||||||||    
T  3952947 ggaggcccagctcgtttgagctgtttgcaccccctcag 3952910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 30175567 - 30175518
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    |||||||||||||  |||||||||||||||||||  |||||||| |||||    
T  30175567 ggaggcccagctccattgagctgtttgcaccccccaagggccgggcctga 30175518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 21190944 - 21190992
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||  |||||||||||||||||||  |||||||| ||||    
T  21190944 ggaggcccagctccattgagctgtttgcaccccccaagggccgggcctg 21190992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 42600644 - 42600582
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  42600644 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 23606861 - 23606914
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggcc 121  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  23606861 cccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggcc 23606914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 10917254 - 10917206
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  10917254 cccatgagtgagggaggcccagctctgttgagctgtttgcaccccctca 10917206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 23798501 - 23798563
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||| |||| | ||||||    
T  23798501 cccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctgat 23798563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 45472236 - 45472191
Alignment:
Q  83 ggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||    
T  45472236 ggcccagctcggttgagctgtttgcaccccctcaggaccggccctg 45472191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 15270143 - 15270191
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  15270143 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 15270191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 2952490 - 2952529
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  2952490 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 2952529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 5861013 - 5861052
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  5861013 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 5861052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 20003894 - 20003933
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  20003894 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 20003933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 40329263 - 40329298
Alignment:
Q  129 ataataatgcattgttctactaaccgagctatgctc 164  Q
    |||||||||||||||||||| |||||||||||||||    
T  40329263 ataataatgcattgttctaccaaccgagctatgctc 40329298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 33978672 - 33978722
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    |||||| |||||| || |||||||||||||||||||| |||||| ||||||    
T  33978672 ggaggctcagctcagtagagctgtttgcaccccctcaaggccggccctgat 33978722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 45193876 - 45193926
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    |||||||||||||||| |||||||||||||| || ||| ||||| ||||||    
T  45193876 ggaggcccagctctgtagagctgtttgcacctccccagagccggccctgat 45193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 3048791 - 3048828
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcag 117  Q
    |||||||||||||  |||||||||||||||||||||||    
T  3048791 ggaggcccagctcgtttgagctgtttgcaccccctcag 3048828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 4322502 - 4322546
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccgg 123  Q
    ||||||||||||||  | |||||||||||||||||||| ||||||    
T  4322502 aggaggcccagctcaatagagctgtttgcaccccctcatggccgg 4322546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 10917339 - 10917307
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  10917339 aaaacaaggggacagaaaatggctgggggtatt 10917307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 1367117 - 1367171
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccg 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1367117 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccg 1367171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 44895527 - 44895473
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccg 122  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44895527 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccg 44895473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 9173261 - 9173322
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 129  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9173261 cccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 13913722 - 13913782
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13913722 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 40502030 - 40502090
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40502030 cccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 27559507 - 27559459
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  27559507 cccatgactgagggaggtccagctctgttgagctgtttgcaccccctca 27559459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 23181756 - 23181711
Alignment:
Q  83 ggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  23181756 ggcccagctcggttgagctgtttgcaccccctcagggccggccctg 23181711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 17168829 - 17168769
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||| ||||    
T  17168829 cccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 19955591 - 19955547
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcacccc 112  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  19955591 cccatgactgagggaggtccagctctgttgagctgtttgcacccc 19955547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 10912111 - 10912160
Alignment:
Q  79 aggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||||||  |||||||||| |||||||||||||||||| ||||    
T  10912111 aggaggcccagctcgtttgagctgttcgcaccccctcagggccggccctg 10912160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 5027992 - 5028028
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5027992 ggaggcccagctcggttgagctgtttgcaccccctca 5028028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 3533031 - 3533078
Alignment:
Q  129 ataataatgcattgttctactaaccgagctatgctcccggaactatta 176  Q
    ||||||||||||||| |||||||| ||||||||||| ||| |||||||    
T  3533031 ataataatgcattgtcctactaactgagctatgctcacgggactatta 3533078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 6771744 - 6771705
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  6771744 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 6771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 14146253 - 14146214
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  14146253 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 14146214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 41697297 - 41697336
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  41697297 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 41697336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 44655587 - 44655548
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  44655587 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 44655548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 51607679 - 51607741
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctgat 130  Q
    ||||||| ||| | |||||||||||| |||||||||||||||| ||||| | |||| ||||||    
T  51607679 cccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgat 51607741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 50880614 - 50880577
Alignment:
Q  82 aggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||  |||||||||||||||||||||||||    
T  50880614 aggcccagctcgtttgagctgtttgcaccccctcaggg 50880577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 1367032 - 1367064
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  1367032 aaaacaaggggacagaaaatggctgggggtatt 1367064  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 3406371 - 3406335
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    |||||||||||||  ||||||||||||||||||||||    
T  3406371 ggaggcccagctcgtttgagctgtttgcaccccctca 3406335  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 3440449 - 3440485
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    |||||||||||||  ||||||||||||||||||||||    
T  3440449 ggaggcccagctcgtttgagctgtttgcaccccctca 3440485  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 12037637 - 12037601
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    ||||||||||||| || ||||||||||||||||||||    
T  12037637 ggaggcccagctcagtagagctgtttgcaccccctca 12037601  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17168915 - 17168883
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  17168915 aaaacaaggggacagaaaatggctgggggtatt 17168883  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 27559596 - 27559564
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  27559596 aaaacaaggggacagaaaatggctgggggtatt 27559564  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 27906966 - 27907002
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctca 116  Q
    |||||||||||||  ||||||||||||||||||||||    
T  27906966 ggaggcccagctcgtttgagctgtttgcaccccctca 27907002  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 40501944 - 40501976
Alignment:
Q  18 aaaacaaggggacagaaaatggctgagggtatt 50  Q
    ||||||||||||||||||||||||| |||||||    
T  40501944 aaaacaaggggacagaaaatggctgggggtatt 40501976  T

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Target: scaffold0039 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 106439 - 106379
Alignment:
Q  68 cccatgactgaaggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  106439 cccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 14421 - 14373
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcagggccggacctg 128  Q
    |||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  14421 ggaggcccagctctgtagagctgtttgcacctccccagggccggccctg 14373  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 1059 - 1020
Alignment:
Q  80 ggaggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  1059 ggaggcccagctcgtttgagctgtttgcaccccctcaggg 1020  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 181480 - 181444
Alignment:
Q  83 ggcccagctctgttgagctgtttgcaccccctcaggg 119  Q
    ||||||||||  |||||||||||||||||||||||||    
T  181480 ggcccagctcgtttgagctgtttgcaccccctcaggg 181444  T

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