View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2341_low_5 (Length: 329)
Name: NF2341_low_5
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2341_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 32875957 - 32875660
Alignment:
| Q |
16 |
taattgtgcacagctcatgtgtttgcgttttaaaattcttctttgtttgaattgccaatcacgttcacgtttacatgttttgctctatgattggcaattg |
115 |
Q |
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| T |
32875957 |
taattgtgcacagctcatgtgtttgcgttttaaaattcttctttgtttgaattgccaatcacgttcacgtttacatgttttgctctatgattggcaattg |
32875858 |
T |
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| Q |
116 |
aagtcatgtaagtaatcacaaattcaactcatgctcttgatatgattgaaattccaattatggtttgacatttagttggtggagccagttatttgtctta |
215 |
Q |
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| T |
32875857 |
aagtcatgtaaataatcacaaattcaactcatgctcttgatatgattgaaattccaattatggtttgacatttagttggtggagccagttatttgtctta |
32875758 |
T |
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| Q |
216 |
atgtctcataattcatccaaacgtattttggcttctaatttatatcgagtttttatttgtgaatttttacttcnnnnnnngcgttaacccttgtgttt |
313 |
Q |
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| T |
32875757 |
atgtctcataattcatccaaacgcattttggcttctaatttatatcgagtttttatttgtgaatttttacttctttttttgcgttaacccttgtgttt |
32875660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 32914201 - 32914135
Alignment:
| Q |
158 |
tgattgaaattccaattatggtttgacatttagttggtggagccagttatttgtcttaatgtctcat |
224 |
Q |
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| T |
32914201 |
tgattgaaattccaattatgatttgacatttagttggtggagttagctatttggttttatgtctcat |
32914135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 32879281 - 32879212
Alignment:
| Q |
48 |
aaattcttctttgtttgaattgccaatcacgttcacgtttacatgttttgctctatgattggcaattgaa |
117 |
Q |
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| T |
32879281 |
aaattcttctttatttgttttgccaatcaagttgacgttgacatgttttgctccatgattgacaattgaa |
32879212 |
T |
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