View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2341_low_6 (Length: 268)
Name: NF2341_low_6
Description: NF2341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2341_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26002447 - 26002701
Alignment:
| Q |
1 |
aaattgagtttaaggaccaatgaatgagatatgatctaacatgnnnnnnngtgtgtaattggcacaggcnnnnnnnggcatatttgatggacatggaggt |
100 |
Q |
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| T |
26002447 |
aaattgagtttaaggaccaatgaatgagatatgatctaacatgtttttttgtgtgtaattggcacaggctttttttggcatatttgatggacatggaggt |
26002546 |
T |
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| Q |
101 |
acaaaagcttcggaattcgctgcacataacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtgatattgaggaagcagtgaaacatg |
200 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002547 |
acaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtgatattgaggaagcagtgaaacatg |
26002646 |
T |
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| Q |
201 |
gttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggttcttg |
255 |
Q |
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| T |
26002647 |
gttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttg |
26002701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 26017335 - 26017513
Alignment:
| Q |
77 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgctgcacataacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
26017335 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
26017434 |
T |
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| Q |
177 |
atattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggttcttg |
255 |
Q |
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| T |
26017435 |
atattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggctcttg |
26017513 |
T |
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