View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2342_high_1 (Length: 680)
Name: NF2342_high_1
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2342_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Original strand, 40749970 - 40750640
Alignment:
| Q |
1 |
tcatctcaaggacttcaaaatcttcaacagtttagtccacatgcaggatttcatcatgagcaaagaccaaacttgtcactgtggttgaaccaagaaaatc |
100 |
Q |
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| T |
40749970 |
tcatctcaaggacttcaaaatattcaacaatttagtccacatgcaggatttcatcatgagcaaagaccaaatttgtcactgtggttgaaccaagaaaatc |
40750069 |
T |
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| Q |
101 |
aacagattaatcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactgc |
200 |
Q |
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| T |
40750070 |
aacagattaatcatcattcatattcacttgatcatgtttcatcaggtttttccgatgttatacaaatggctcaaactaatactccaatgtcagctactgc |
40750169 |
T |
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| Q |
201 |
acttcttcagaaagcagctcaaataggttcaacaagaagcagtactaatccttccatttttagtggaagttttggtgtaatgagttcatcctctacacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40750170 |
acttcttcagaaagcagctcaaataggttcaacaagaagcagtactaatccttccatatttagtggaagttttggtgtaatgagttcatcctctacacaa |
40750269 |
T |
|
| Q |
301 |
acaacgagtttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgcaa |
400 |
Q |
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| T |
40750270 |
acaacgagtttaaacaaaaaccatgatgaggttaatatggtcattaatcagaaaatgaagcagcatgagaattttgatccaagtagtagtagaagtgcaa |
40750369 |
T |
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| Q |
401 |
ctatggttggtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcacc |
500 |
Q |
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| T |
40750370 |
ctatggttggtaattctagtgggtttagagattttcttggagtgagtaaccatcaatttctacctcaagagcttgcaaagtttgcttccataaattcaac |
40750469 |
T |
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| Q |
501 |
gatgatgagtttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgactataaattaattgatatttttggaactg |
600 |
Q |
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| T |
40750470 |
gatgatgagtttaaatcaattcaatgctgggtgcatcaatgaaaattaattagtccttaattaagtgttgacta-----taattgatatttttggaactg |
40750564 |
T |
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| Q |
601 |
catgtgaatagatagataatgtttgtgatagtaatgcatgggacccagtgcatgtttgagatgaatactgaatttctcga |
680 |
Q |
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| T |
40750565 |
catgtga----atagataatgtttgtgatagtaatgcatgggacccagtgcatgtttgagatgaatactgaatttctcga |
40750640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 28495353 - 28495290
Alignment:
| Q |
184 |
ccaatgtcagctactgcacttcttcagaaagcagctcaaataggttcaacaagaagcagtacta |
247 |
Q |
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| T |
28495353 |
ccaatgtcagctactgctcttctgcaaaaagcagctcaaatgggttcaactagaagcaatacta |
28495290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 50785528 - 50785480
Alignment:
| Q |
185 |
caatgtcagctactgcacttcttcagaaagcagctcaaataggttcaac |
233 |
Q |
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| T |
50785528 |
caatgtcagcaactgcacttcttcagaaagctgctcaaatgggtgcaac |
50785480 |
T |
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