View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2342_high_14 (Length: 234)
Name: NF2342_high_14
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2342_high_14 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 27983344 - 27983581
Alignment:
| Q |
1 |
atctggcagggtcccgagtcccttaagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaacactcaaatattggggtagt----tttga |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27983344 |
atctggcagggtcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagttagttttga |
27983443 |
T |
|
| Q |
97 |
agtatggattacactacacttctcacaagtgtactataatatgtaatgcatatatataacattcactatttgcttcttgaatggaacttcgcccttgtaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27983444 |
agtatggattacactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgcttcttgaatggaacttcgcccttgtaa |
27983543 |
T |
|
| Q |
197 |
ttgaaatttgcttgtccatgtgctaatttttcaataat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27983544 |
ttgaaatttgcttgtccatgtgctaatttttcaataat |
27983581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28069874 - 28070111
Alignment:
| Q |
1 |
atctggcagggtcccgagtcccttaagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaacactcaaatattggggtagt----tttga |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
28069874 |
atctggcagggtcccgagtccctttagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaaaactcaaatattggggtagttagttttga |
28069973 |
T |
|
| Q |
97 |
agtatggattacactacacttctcacaagtgtactataatatgtaatgcatatatataacattcactatttgcttcttgaatggaacttcgcccttgtaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28069974 |
agtatggattacactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgcttcttgaatggaacttcgcccttgtaa |
28070073 |
T |
|
| Q |
197 |
ttgaaatttgcttgtccatgtgctaatttttcaataat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28070074 |
ttgaaatttgcttgtccatgtgctaatttttcaataat |
28070111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 27981992 - 27982202
Alignment:
| Q |
16 |
gagtcccttaagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaacactcaaatattggggtagttttgaagtatggattacactacac |
115 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||| |||| |||| |||||| || ||||| | |||||||||| |||||||||| ||| |||||| || |
|
|
| T |
27981992 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtag-tttgaagtatagatcacactatac |
27982090 |
T |
|
| Q |
116 |
ttctcacaagtgtactataatatgtaatgcatatatataacattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccat |
215 |
Q |
| |
|
| |||| ||||||| ||||||||| ||||||||| |||||||| ||||||||| |||||||| || || || ||||| |||||| |||||||| | |
|
|
| T |
27982091 |
tcctcataagtgtattataatatgaaatgcatatgtataacatccactatttgtttcttgaaatgagtttgacctttgtatttgaaagttgcttgtttgt |
27982190 |
T |
|
| Q |
216 |
gtgctaattttt |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27982191 |
gtgctaattttt |
27982202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 28068522 - 28068732
Alignment:
| Q |
16 |
gagtcccttaagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaacactcaaatattggggtagttttgaagtatggattacactacac |
115 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||| |||| |||| |||||| || ||||| | |||||||||| |||||||||| ||| |||||| || |
|
|
| T |
28068522 |
gagtccctttagtgatacatatagctcaacccctgcttccaattctgagtgcacaaaactcatacattggggtag-tttgaagtatagatcacactatac |
28068620 |
T |
|
| Q |
116 |
ttctcacaagtgtactataatatgtaatgcatatatataacattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccat |
215 |
Q |
| |
|
| |||| ||||||| ||||||||| ||||||||| |||||||| ||||||||| |||||||| || || || ||||| |||||| |||||||| | |
|
|
| T |
28068621 |
tcctcataagtgtattataatatgaaatgcatatgtataacatccactatttgtttcttgaaatgagtttgacctttgtatttgaaagttgcttgtttgt |
28068720 |
T |
|
| Q |
216 |
gtgctaattttt |
227 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28068721 |
gtgctaattttt |
28068732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 26417616 - 26417387
Alignment:
| Q |
4 |
tggcagggtcccgagtcccttaagtgatgcatgtagctcaaccccaacttctaatttcaagtgcagaacactcaaatattggggtagttttgaagtatgg |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| ||||| || || ||||||||| || |||| | |
|
|
| T |
26417616 |
tggcagggtcccgagtccctttagtgatgcatgtacctcaacccctgcttctaatttcaagtgcggaaaactcagatctttgggtagtttgga-gtatag |
26417518 |
T |
|
| Q |
104 |
attacactacacttctcacaagtgtactataatatgtaatgcatatatataacattcactatttgcttcttgaatggaacttcgcccttgtaattgaaat |
203 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
26417517 |
attacgctacacttctcacaagtgtactataatatgtaatgcatatgtataacattcactatttgcttcttgaattgaacttggctcttgtaattgaaat |
26417418 |
T |
|
| Q |
204 |
ttgcttgtccatgtgctaatttttcaataat |
234 |
Q |
| |
|
|| | ||||| |||||||||||||||||||| |
|
|
| T |
26417417 |
ttacctgtccgtgtgctaatttttcaataat |
26417387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University