View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2342_high_17 (Length: 207)
Name: NF2342_high_17
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2342_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 25797701 - 25797871
Alignment:
| Q |
21 |
gaggcttttctgattccaaatggtagaaaatggttcatcctttgtggaactccttagcttaaatattatataaacaatcattccaactaaaaatccaaat |
120 |
Q |
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| T |
25797701 |
gaggcttttctgattccaaatggtagaaaatggttcatcctttgtggaactccttagcttaaatattatataaacaatcattccaactaaaaatccaaat |
25797800 |
T |
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| Q |
121 |
gatgcatttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcat |
191 |
Q |
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| T |
25797801 |
gatgcatttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcat |
25797871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 1808507 - 1808341
Alignment:
| Q |
25 |
cttttctgattccaaatggtagaaaatggttcatcctttgtggaactccttagcttaaatattatataaacaatcattccaactaaaaatccaaatgatg |
124 |
Q |
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| T |
1808507 |
cttttctggttccaaatggtagaaagtggtttatcattactccaattccttagcttaagtaacacataaacaatcattccaaccaaaaatccaagagcag |
1808408 |
T |
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| Q |
125 |
catttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcat |
191 |
Q |
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| T |
1808407 |
cacttgatccaaccaatgaaacagcagtgcaaataagtgccacaaaagaatcttctttactattcat |
1808341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 1876042 - 1875945
Alignment:
| Q |
94 |
acaatcattccaactaaaaatccaaatgatgcatttgatccaaccattgaaacagcagtggaaataagagccacaaagaaatcttctttgctattcat |
191 |
Q |
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| T |
1876042 |
acaatcattccaaccaaaaatcctagtgctgcacttgatcccaccaatgaaacagcagtgcaaataagtgccacaaaggaatcttctttgctattcat |
1875945 |
T |
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