View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2342_high_6 (Length: 352)

Name: NF2342_high_6
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2342_high_6
NF2342_high_6
[»] chr1 (1 HSPs)
chr1 (1-337)||(5828214-5828550)
[»] chr2 (1 HSPs)
chr2 (181-302)||(6853441-6853560)
[»] chr8 (1 HSPs)
chr8 (242-295)||(32496026-32496079)
[»] chr6 (1 HSPs)
chr6 (251-281)||(31105937-31105967)
[»] chr7 (1 HSPs)
chr7 (120-153)||(6901177-6901210)
[»] chr3 (1 HSPs)
chr3 (259-287)||(29205581-29205609)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5828214 - 5828550
Alignment:
Q  1 acaatcaaaagaaaaatcaatagagagaggagcaatcaaacaaacaaaagaattaatcaggagataatcaaccaaacagacaaatcaacagagtgagaat 100  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  5828214 acaatcaaaagaaaaaccaataaagagaggagcaatcaaacaaacaaaagaatcaataaagagataatcaaccaaacagacaaatcaacagagtgagaat 5828313  T
Q  101 caataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaatcaaacaatcaaccatagaaattgcattgtcaaagtggttatttatc 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5828314 caataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaatcaaacaatcaaccatagaaattgcagtgtcaaagtggttatttatc 5828413  T
Q  201 caaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcaccataacatctctagtatctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828414 caaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcaccataacatctctagtatctt 5828513  T
Q  301 ggatggacttgcgactcgggtaattgtatgtcatgag 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  5828514 ggatggacttgcgactcgggtaattgtatgtcatgag 5828550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
Q  181 tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac 280  Q
    ||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| |||||  ||||||||||| | |||||||||    
T  6853560 tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac 6853463  T
Q  281 cataacatctctagtatcttgg 302  Q
    || |||||||||||| ||||||    
T  6853462 cacaacatctctagtctcttgg 6853441  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
Q  242 ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt 295  Q
    |||||||| ||||||||||||| ||||||||||||||||  |||| ||||||||    
T  32496079 ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt 32496026  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
Q  251 aaatatagagttatattgagttttcttcacc 281  Q
    |||||||||||||||||||||||||||||||    
T  31105937 aaatatagagttatattgagttttcttcacc 31105967  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
Q  120 agaagaagcaaccaaagagagaaatcaaaccaaa 153  Q
    ||||||||||||||||||| ||||||||||||||    
T  6901177 agaagaagcaaccaaagagtgaaatcaaaccaaa 6901210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 29205609 - 29205581
Alignment:
Q  259 agttatattgagttttcttcaccataaca 287  Q
    |||||||||||||||||||||||||||||    
T  29205609 agttatattgagttttcttcaccataaca 29205581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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