View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2342_high_8 (Length: 313)
Name: NF2342_high_8
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2342_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 6855234 - 6855520
Alignment:
| Q |
17 |
actctgtgggccttaaacatggaatccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaa |
116 |
Q |
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| T |
6855234 |
actctgtgggccttaaacatggaatccccccttatgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaa |
6855333 |
T |
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| Q |
117 |
gcttcccatcaagggttttgacaacccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatcttatt |
216 |
Q |
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| T |
6855334 |
gcttcccatcgagggttttgacaacccggactgtatataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaatatattatt |
6855433 |
T |
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| Q |
217 |
tttcaggccacgaagcgcaatttgcaaagttcnnnnnnntctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
303 |
Q |
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| T |
6855434 |
tttcaggccacgaagcgcaatttgcaaagttcaaaaaaatctatttatccacagagaaatatcatcactaaaaataaggaagaataa |
6855520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
51 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
120 |
Q |
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|||| |||||||||| ||||| |||||| |||||||||||||||||| | |||||| | ||||||||||| |
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| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
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