View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2342_low_2 (Length: 638)

Name: NF2342_low_2
Description: NF2342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2342_low_2
NF2342_low_2
[»] chr3 (17 HSPs)
chr3 (94-528)||(49204920-49205354)
chr3 (529-625)||(29472901-29472998)
chr3 (529-630)||(51339785-51339887)
chr3 (529-616)||(30735497-30735586)
chr3 (529-630)||(21559648-21559751)
chr3 (529-630)||(46111945-46112048)
chr3 (529-630)||(48200772-48200875)
chr3 (529-630)||(34749899-34750002)
chr3 (529-630)||(22894767-22894869)
chr3 (529-630)||(36749493-36749596)
chr3 (529-602)||(38231408-38231482)
chr3 (529-630)||(36370339-36370442)
chr3 (529-630)||(44000076-44000179)
chr3 (529-576)||(50966261-50966308)
chr3 (529-576)||(51069396-51069443)
chr3 (529-630)||(39072280-39072377)
chr3 (529-630)||(39467103-39467205)
[»] chr7 (23 HSPs)
chr7 (529-630)||(34828152-34828254)
chr7 (529-630)||(36346566-36346668)
chr7 (529-630)||(28307496-28307599)
chr7 (529-630)||(45782661-45782764)
chr7 (529-616)||(42220965-42221053)
chr7 (529-630)||(26972204-26972307)
chr7 (529-630)||(34108513-34108616)
chr7 (529-630)||(31148377-31148479)
chr7 (529-630)||(46475111-46475214)
chr7 (529-630)||(5811165-5811267)
chr7 (529-630)||(21807324-21807426)
chr7 (529-630)||(7699884-7699987)
chr7 (529-630)||(7700082-7700185)
chr7 (529-630)||(7700280-7700383)
chr7 (529-630)||(7700478-7700581)
chr7 (529-602)||(13108263-13108336)
chr7 (529-630)||(30887787-30887890)
chr7 (529-616)||(29953573-29953662)
chr7 (529-630)||(23980218-23980320)
chr7 (529-630)||(36957516-36957617)
chr7 (529-602)||(42950038-42950111)
chr7 (529-585)||(384573-384630)
chr7 (529-612)||(15020384-15020468)
[»] chr8 (11 HSPs)
chr8 (529-630)||(18184640-18184742)
chr8 (529-630)||(30432426-30432528)
chr8 (529-630)||(36189303-36189404)
chr8 (529-616)||(12665446-12665535)
chr8 (529-630)||(10203751-10203854)
chr8 (529-630)||(31318892-31318995)
chr8 (529-630)||(33726098-33726201)
chr8 (529-630)||(42162685-42162788)
chr8 (529-629)||(43186115-43186216)
chr8 (535-630)||(44081867-44081964)
chr8 (208-369)||(32191640-32191801)
[»] chr4 (10 HSPs)
chr4 (529-630)||(44275793-44275895)
chr4 (529-616)||(35545013-35545102)
chr4 (529-616)||(49243916-49244004)
chr4 (529-630)||(6112717-6112819)
chr4 (529-630)||(21390957-21391059)
chr4 (529-630)||(28093097-28093200)
chr4 (529-630)||(3672361-3672464)
chr4 (529-630)||(7217852-7217955)
chr4 (529-595)||(46192482-46192549)
chr4 (541-618)||(52191214-52191292)
[»] chr1 (7 HSPs)
chr1 (529-627)||(34307139-34307239)
chr1 (529-630)||(39249864-39249967)
chr1 (529-630)||(2509111-2509214)
chr1 (529-630)||(46901736-46901839)
chr1 (529-629)||(28647441-28647542)
chr1 (529-630)||(19258674-19258776)
chr1 (196-265)||(8333067-8333136)
[»] chr2 (10 HSPs)
chr2 (529-630)||(44958200-44958303)
chr2 (529-630)||(33732656-33732758)
chr2 (529-613)||(16089925-16090010)
chr2 (529-616)||(37498864-37498953)
chr2 (529-630)||(6376240-6376342)
chr2 (530-630)||(3830900-3831001)
chr2 (549-630)||(14573082-14573165)
chr2 (529-627)||(41188859-41188959)
chr2 (529-595)||(36315684-36315751)
chr2 (529-580)||(37914238-37914290)
[»] chr5 (12 HSPs)
chr5 (529-629)||(31800646-31800747)
chr5 (529-630)||(42683686-42683789)
chr5 (529-630)||(39371014-39371117)
chr5 (529-630)||(2237363-2237466)
chr5 (529-630)||(40887943-40888046)
chr5 (529-629)||(13347216-13347318)
chr5 (529-630)||(1815621-1815720)
chr5 (530-602)||(27553376-27553448)
chr5 (529-630)||(14831631-14831734)
chr5 (549-630)||(9408060-9408143)
chr5 (529-602)||(19596069-19596143)
chr5 (529-602)||(4300545-4300618)
[»] chr6 (6 HSPs)
chr6 (529-602)||(3118048-3118122)
chr6 (529-630)||(13697655-13697757)
chr6 (529-630)||(24208531-24208633)
chr6 (529-630)||(3986907-3987009)
chr6 (529-630)||(14023021-14023123)
chr6 (529-629)||(15345661-15345762)
[»] scaffold0043 (1 HSPs)
scaffold0043 (529-602)||(87164-87237)
[»] scaffold0062 (1 HSPs)
scaffold0062 (529-630)||(6805-6908)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 94 - 528
Target Start/End: Complemental strand, 49205354 - 49204920
Alignment:
Q  94 tccactaatcctacaccctgtccttgatttgtagtgtgttaccttttaatggttataaaattgaggcctggacggagttaggtcttaatgaaaaaggtgt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49205354 tccactaatcctacaccctgtccttgatttgtagtgtgttaccttttaatggttataaagttgaggcctggacggagttaggtcttaatgaaaaaggtgt 49205255  T
Q  194 atgttccttcaaagataaactcatggagatggagggtgcacaagattttgaaatagagtcctcttgtattgatttgttgttgagaaaatatcgaaggtat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  49205254 atgttccttcaaagataaactcatggagatggagggtgcacaagattttgaaatagagtcctcttttattgatttgttgctgataaaatatcgaaggtat 49205155  T
Q  294 gaaaaccattgttaacgaggatataatgtagctttatatcaaactaaccaagaatgagttaaaattgcggtgtttcccgtggtagcacactttaatgcta 393  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49205154 gaaagccattgttaacgaggatacaatgtagctttatatcaaactaaccaagaatgagttaaaattgcggtgtttcccgtggaagcacactttaatgcta 49205055  T
Q  394 catgtattggggaaaagggtgtgaagtttgttcatggaagcgaaggtacgcaacttctgggctaaggaggcagagatcagagtggtgtaccttccaatag 493  Q
    || ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49205054 cacgtactggggaaaagggtgtgaagttggttcatggaagccaaggtacgcaacttctgggctaaggaggcagagatcagagtggtgtaccttccaatag 49204955  T
Q  494 atcattatatgggtcattttacctatgataaagat 528  Q
    |||||||||||||||||||||||| ||||||||||    
T  49204954 atcattatatgggtcattttacctgtgataaagat 49204920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 529 - 625
Target Start/End: Complemental strand, 29472998 - 29472901
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttc 625  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  29472998 aaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 51339785 - 51339887
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||   |||||||||| ||||||||||||| ||||||||||||||||| || |||||||    
T  51339785 aaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcat 51339884  T
Q  628 ctc 630  Q
    |||    
T  51339885 ctc 51339887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 616
Target Start/End: Original strand, 30735497 - 30735586
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggta-ttttagtaattt-acatcatatcatca 616  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||    
T  30735497 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca 30735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 21559751 - 21559648
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatccc-atgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||| |||||| | ||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| | || ||||||    
T  21559751 aaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttca 21559652  T
Q  627 tctc 630  Q
    ||||    
T  21559651 tctc 21559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 46111945 - 46112048
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacat-cccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| | |||||||||||||  |||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||| || ||||||    
T  46111945 aaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttca 46112044  T
Q  627 tctc 630  Q
    ||||    
T  46112045 tctc 46112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 48200875 - 48200772
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||||||||||||||||||   |||||||||  ||||||| ||| |||||||| ||||| |||||||||||||||||||| ||||||    
T  48200875 aaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttca 48200776  T
Q  627 tctc 630  Q
    ||||    
T  48200775 tctc 48200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 34749899 - 34750002
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatccc-atgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||  ||||||||||||||||||||  |||||||||| ||| |||| |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  34749899 aaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 34749998  T
Q  627 tctc 630  Q
    ||||    
T  34749999 tctc 34750002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 22894869 - 22894767
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaatt-tacatcatatcatcatccattttca 626  Q
    |||||||||| |||||| |||||| |||||||  |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  22894869 aaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttca 22894771  T
Q  627 tctc 630  Q
    ||||    
T  22894770 tctc 22894767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 36749596 - 36749493
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||||||||||  |||||||||||||   ||||||||| || ||||| |||| ||||||| ||||| ||||||||||||||||| || ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  627 tctc 630  Q
    ||||    
T  36749496 tctc 36749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 529 - 602
Target Start/End: Complemental strand, 38231482 - 38231408
Alignment:
Q  529 aaaaagataggtagacatcct-ttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||| ||||||| |||||| ||||    
T  38231482 aaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcattt 38231408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 36370339 - 36370442
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaattt-acatcatatcatcatccattttca 626  Q
    ||||||||||||||| |  |||||||||||||   |||| |||| || ||||| |||||||||||| |||||||| |||||||||||||| || ||||||    
T  36370339 aaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 36370438  T
Q  627 tctc 630  Q
    ||||    
T  36370439 tctc 36370442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 44000179 - 44000076
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||||||||||  |||||||||||||   ||||||||  || ||||| |||| ||||||| ||||| ||||||||||||||||| || ||||||    
T  44000179 aaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 44000080  T
Q  627 tctc 630  Q
    ||||    
T  44000079 tctc 44000076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 50966308 - 50966261
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatccc 576  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  50966308 aaaaagataggtagacattctttttcatacacctcttatgtacatccc 50966261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 51069443 - 51069396
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatccc 576  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  51069443 aaaaagataggtagacattctttttcatacacctcttatgtacatccc 51069396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 39072280 - 39072377
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaatttacatcatatcatcatccattttcatc 628  Q
    |||||||||||||||||  |||||| ||||| |  | ||||||| ||||||||| | |||||||||||||    |||||| ||||||| |||||||||||    
T  39072280 aaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagta----acatcacatcatcacccattttcatc 39072375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 39467103 - 39467205
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||| ||| ||||||| ||||||| |  ||||||| | ||||||||| || |||||||||||||| | |||| ||| ||| || |||||||    
T  39467103 aaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcat 39467202  T
Q  628 ctc 630  Q
    |||    
T  39467203 ctc 39467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 34828254 - 34828152
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||  |||||||    
T  34828254 aaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcat 34828155  T
Q  628 ctc 630  Q
    |||    
T  34828154 ctc 34828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 36346566 - 36346668
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  36346566 aaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatca-cctttttca 36346664  T
Q  627 tctc 630  Q
    ||||    
T  36346665 tctc 36346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 28307496 - 28307599
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||  ||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||    
T  28307496 aaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttca 28307595  T
Q  627 tctc 630  Q
    ||||    
T  28307596 tctc 28307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 45782661 - 45782764
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||| ||||||   ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  45782661 aaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttca 45782760  T
Q  627 tctc 630  Q
    ||||    
T  45782761 tctc 45782764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 529 - 616
Target Start/End: Original strand, 42220965 - 42221053
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggta-ttttagtaattt-acatcatatcatca 616  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||    
T  42220965 aaaaagataggtagaca-cctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatca 42221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 26972204 - 26972307
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  26972204 aaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 26972303  T
Q  627 tctc 630  Q
    ||||    
T  26972304 tctc 26972307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 34108616 - 34108513
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  34108616 aaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 34108517  T
Q  627 tctc 630  Q
    ||||    
T  34108516 tctc 34108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 31148479 - 31148377
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||||||||||  |||||||||||||| |||||  ||| ||||| |||||||  ||||||||||| ||||||||||||||||| ||||||||||    
T  31148479 aaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcat 31148380  T
Q  628 ctc 630  Q
    |||    
T  31148379 ctc 31148377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 46475214 - 46475111
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgtta-ggggtattttagtaattt-acatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||| ||||||||| |||||||||||||||||| |||||| ||| ||| || ||||||    
T  46475214 aaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttca 46475115  T
Q  627 tctc 630  Q
    ||||    
T  46475114 tctc 46475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 5811165 - 5811267
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||| ||||||| |  ||||||| | ||||||||||||||||||||||||||| |||||| ||| ||| || |||||||    
T  5811165 aaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcat 5811264  T
Q  628 ctc 630  Q
    |||    
T  5811265 ctc 5811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 21807324 - 21807426
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    |||||||||||| |||| ||||||| ||||||  || || |||| |||| |||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  21807324 aaaaagataggttgacaaccttttttatacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcat 21807423  T
Q  628 ctc 630  Q
    |||    
T  21807424 ctc 21807426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 7699884 - 7699987
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatc-ccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||| ||||| |||| |  ||||||||| |||||||||||||| |||| ||||||||||||||| |||| |    
T  7699884 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7699983  T
Q  627 tctc 630  Q
    ||||    
T  7699984 tctc 7699987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 7700082 - 7700185
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatc-ccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||| ||||| |||| |  ||||||||| |||||||||||||| |||| ||||||||||||||| |||| |    
T  7700082 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700181  T
Q  627 tctc 630  Q
    ||||    
T  7700182 tctc 7700185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 7700280 - 7700383
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatc-ccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||| ||||| |||| |  ||||||||| |||||||||||||| |||| ||||||||||||||| |||| |    
T  7700280 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700379  T
Q  627 tctc 630  Q
    ||||    
T  7700380 tctc 7700383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 7700478 - 7700581
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatc-ccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||| ||||| |||| |  ||||||||| |||||||||||||| |||| ||||||||||||||| |||| |    
T  7700478 aaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatcctttttta 7700577  T
Q  627 tctc 630  Q
    ||||    
T  7700578 tctc 7700581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 529 - 602
Target Start/End: Complemental strand, 13108336 - 13108263
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    ||||||||||||||||| ||||||| |||||||  | ||||||| | |||||||||||||||||||||||||||    
T  13108336 aaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaattt 13108263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 30887890 - 30887787
Alignment:
Q  529 aaaaagataggta-gacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||| ||| |||| ||||||||||||||  ||||| |||| ||||||| |||| ||||||| ||||| ||||||||||||||||| || ||||||    
T  30887890 aaaaagatacgtaagacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttca 30887791  T
Q  627 tctc 630  Q
    ||||    
T  30887790 tctc 30887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 616
Target Start/End: Original strand, 29953573 - 29953662
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatca 616  Q
    ||||||||||||||||| ||||||||||||||  |||||||| | | |||||| |||||| ||||| ||||| |||||||||||||||||    
T  29953573 aaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatca 29953662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 23980320 - 23980218
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||||||||||| |||||      ||||||||| ||| |||||| |||||||||||||||| |||||| ||| ||| || |||||||    
T  23980320 aaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttttcat 23980221  T
Q  628 ctc 630  Q
    |||    
T  23980220 ctc 23980218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 36957617 - 36957516
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||||||||||   ||||| |||||||  | || |||| |||||||||| ||||||||||||||| ||||||| | || |||||||||||||||    
T  36957617 aaaaagataggtagacacaattttttatacacctttcatataca-cccatgtgttgggggtattttagtaattttacattacattatcatccattttcat 36957519  T
Q  628 ctc 630  Q
    |||    
T  36957518 ctc 36957516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 42950038 - 42950111
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    ||||||||||||||||| ||||||| |||||||    ||||||| ||||||| | |||||||||||||||||||    
T  42950038 aaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 585
Target Start/End: Complemental strand, 384630 - 384573
Alignment:
Q  529 aaaaagataggtagacatcctttttc-atacaccacttatgtacatcccatgtgttag 585  Q
    |||||||||||||||||||||||||| ||||||| |  ||||||||| ||||||||||    
T  384630 aaaaagataggtagacatcctttttctatacacctcccatgtacatctcatgtgttag 384573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 612
Target Start/End: Complemental strand, 15020468 - 15020384
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatc 612  Q
    |||||||||  ||||||| | |||| ||||||| |  || |||||| |||||||||||| |||||||||||||| ||||||||||    
T  15020468 aaaaagataaatagacattcatttttatacacctcccatatacatctcatgtgttagggatattttagtaatttcacatcatatc 15020384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 18184742 - 18184640
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||||||||| |||| |||||||||||| || |||||||    
T  18184742 aaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcat 18184643  T
Q  628 ctc 630  Q
    |||    
T  18184642 ctc 18184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 30432528 - 30432426
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||| | |||||| ||||||||||||||| |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| || |||||||    
T  30432528 aaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttcat 30432429  T
Q  628 ctc 630  Q
    |||    
T  30432428 ctc 30432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 36189404 - 36189303
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||| ||||||||||||  | |||||||    
T  36189404 aaaaagataggtagacaccctttttcatacaccacttatgtaca-cccatatgttaggggtattttaataattttatatcatatcatcactccttttcat 36189306  T
Q  628 ctc 630  Q
    |||    
T  36189305 ctc 36189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 529 - 616
Target Start/End: Complemental strand, 12665535 - 12665446
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatca 616  Q
    |||||||||||||||||||||||||| |||||| |||||||| | || |||||||||||||||||||||||| |||||||||||||||||    
T  12665535 aaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatca 12665446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 10203854 - 10203751
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||| | |||||||||| || ||||| |||||| ||||||||||| |||| ||||||||| || || ||||||    
T  10203854 aaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttca 10203755  T
Q  627 tctc 630  Q
    ||||    
T  10203754 tctc 10203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 31318995 - 31318892
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||||| ||||||||||||  ||||| ||||  ||||||| ||||| |||||| ||||| ||||||||||||||||| || ||||||    
T  31318995 aaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttca 31318896  T
Q  627 tctc 630  Q
    ||||    
T  31318895 tctc 31318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 33726201 - 33726098
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatcca-ttttca 626  Q
    ||||||||||||||||| ||||||| ||||||| |  |||||||   ||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||    
T  33726201 aaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttca 33726102  T
Q  627 tctc 630  Q
    ||||    
T  33726101 tctc 33726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 42162788 - 42162685
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||||||||||  |||||||||||||   |||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  42162788 aaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 42162689  T
Q  627 tctc 630  Q
    ||||    
T  42162688 tctc 42162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 43186216 - 43186115
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||||| ||||||||||||  |||||||||| || |||| ||||||| |||| ||||| |||| |||||||||||| |  |||||||    
T  43186216 aaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttcat 43186117  T
Q  628 ct 629  Q
    ||    
T  43186116 ct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 535 - 630
Target Start/End: Complemental strand, 44081964 - 44081867
Alignment:
Q  535 ataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcatctc 630  Q
    ||||||||||| ||||||||||||||  ||||||||||  ||||||| |||||||||||| ||||| ||||||| ||||||||| || ||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctc 44081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 32191640 - 32191801
Alignment:
Q  208 ataaactcatggagatggagggtgcacaagattttgaaatagagtcctcttgtattgatttgttgttga-gaaaatatcgaaggtatgaaaaccattgtt 306  Q
    |||||||| || |||||||||||| |||  |||||||||||||||| |||| ||||||  | ||||||| ||  ||||| ||||||||||| | ||||||    
T  32191640 ataaactcgtgaagatggagggtgaacacaattttgaaatagagtcatcttatattga-ctattgttgaggagcatatcaaaggtatgaaatctattgtt 32191738  T
Q  307 aacgaggatataatgtagct-ttatatcaaactaaccaagaatgagttaaaattgcggtgtttc 369  Q
    ||  |||||  ||| | ||| | |||||||||||||||   ||||||| |||||| ||||||||    
T  32191739 aagaaggatgcaatat-gctgtgatatcaaactaaccagtgatgagtttaaattgtggtgtttc 32191801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 44275895 - 44275793
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||| ||    
T  44275895 aaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaat 44275796  T
Q  628 ctc 630  Q
    |||    
T  44275795 ctc 44275793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 616
Target Start/End: Complemental strand, 35545102 - 35545013
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggta-ttttagtaa-tttacatcatatcatca 616  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||| ||||||||| |||||||||||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatca 35545013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 529 - 616
Target Start/End: Complemental strand, 49244004 - 49243916
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatca 616  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||| |||||||||||||||||    
T  49244004 aaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatca 49243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 6112819 - 6112717
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    |||||||||||||||||  |||||||||||||  ||||||||||  |||||| |||||||||||| ||||| |||||||||||||||||||| |||||||    
T  6112819 aaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttcat 6112720  T
Q  628 ctc 630  Q
    |||    
T  6112719 ctc 6112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 21390957 - 21391059
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| |||||||||||||||  ||||||||| | |||||||||||||||||||||||| ||||||||||||  |||  |||||||||    
T  21390957 aaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcat 21391056  T
Q  628 ctc 630  Q
    |||    
T  21391057 ctc 21391059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 28093097 - 28093200
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagta-atttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  ||||||| |||||||||||| ||||  ||||||||||||||||| || ||||||    
T  28093097 aaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttca 28093196  T
Q  627 tctc 630  Q
    ||||    
T  28093197 tctc 28093200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 3672464 - 3672361
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaatt-tacatcatatcatcatccattttca 626  Q
    ||||||||||||||| | ||||||||||||||  |||||||||| || ||||| |||||||||||| ||||||| ||||||||||||||| || ||||||    
T  3672464 aaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttca 3672365  T
Q  627 tctc 630  Q
    ||||    
T  3672364 tctc 3672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 7217955 - 7217852
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||| || |||||||||  ||||||||||||| ||||||||||||||||| || |||| |    
T  7217955 aaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttttta 7217856  T
Q  627 tctc 630  Q
    ||||    
T  7217855 tctc 7217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 46192549 - 46192482
Alignment:
Q  529 aaaaagataggtagacatcctttttc-atacaccacttatgtacatcccatgtgttaggggtatttta 595  Q
    ||||||||||||||||| |||||||  ||||||| |||||||||| |||||||   ||||||||||||    
T  46192549 aaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtatttta 46192482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 618
Target Start/End: Original strand, 52191214 - 52191292
Alignment:
Q  541 agacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatc 618  Q
    ||||| ||||||| ||||||| ||  |||||| ||||| ||||||| |||||||||||||||  ||||| |||||||||    
T  52191214 agacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatc 52191292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 529 - 627
Target Start/End: Original strand, 34307139 - 34307239
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  34307139 aaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttca 34307238  T
Q  627 t 627  Q
    |    
T  34307239 t 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 39249864 - 39249967
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||  ||||||| |||||||||||||||||| ||||||| |||||| ||||| ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  627 tctc 630  Q
    ||||    
T  39249964 tctc 39249967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 2509214 - 2509111
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||||||||||   ||||||||||||| |||||||||| || ||||| |||||| ||||||||||| |||||||||||||| || || ||||||    
T  2509214 aaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttttca 2509115  T
Q  627 tctc 630  Q
    ||||    
T  2509114 tctc 2509111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 46901736 - 46901839
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatc-ccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||||||||||||||||||||||||   |||||||||| | |||||| | ||| |||||| ||||| ||||||||||||||||| || ||||||    
T  46901736 aaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttca 46901835  T
Q  627 tctc 630  Q
    ||||    
T  46901836 tctc 46901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 28647542 - 28647441
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||| ||||| | || |||||||||||||||||||||  ||||||| |||||| |||||| |||| || || |||||||    
T  28647542 aaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 28647443  T
Q  628 ct 629  Q
    ||    
T  28647442 ct 28647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 19258674 - 19258776
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||| ||||| | || ||||||| |||||||||||||  ||||||| |||||| |||||| |||| || || |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  628 ctc 630  Q
    |||    
T  19258774 ctc 19258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 8333067 - 8333136
Alignment:
Q  196 gttccttcaaagataaactcatggagatggagggtgcacaagattttgaaatagagtcctcttgtattga 265  Q
    |||||| |||||||||||||  |||||||| ||||||||||||||||||| | ||| |||||| ||||||    
T  8333067 gttcctacaaagataaactctaggagatggtgggtgcacaagattttgaagttgagacctcttatattga 8333136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 44958303 - 44958200
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||| ||||||||||||||||| || |||| |    
T  44958303 aaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttta 44958204  T
Q  627 tctc 630  Q
    ||||    
T  44958203 tctc 44958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 33732758 - 33732656
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||| | |||||||||||||||||| |||||||||||||| || || |||||||    
T  33732758 aaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttcat 33732659  T
Q  628 ctc 630  Q
    |||    
T  33732658 ctc 33732656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 613
Target Start/End: Complemental strand, 16090010 - 16089925
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatca 613  Q
    ||||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  16090010 aaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatca 16089925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 616
Target Start/End: Original strand, 37498864 - 37498953
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacat-cccatgtgttaggggtattttagtaa-tttacatcatatcatca 616  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  37498864 aaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatca 37498953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 6376240 - 6376342
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||||||||||| ||||||| |  ||||||||| |||||||||| |||||||||||||||| |||||| ||| ||| ||||||||||    
T  6376240 aaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttcat 6376339  T
Q  628 ctc 630  Q
    |||    
T  6376340 ctc 6376342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 530 - 630
Target Start/End: Original strand, 3830900 - 3831001
Alignment:
Q  530 aaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcatc 628  Q
    |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||| || |||| |  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  629 tc 630  Q
    ||    
T  3831000 tc 3831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 630
Target Start/End: Complemental strand, 14573165 - 14573082
Alignment:
Q  549 tttttcatacaccacttatgtacatccc-atgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcatctc 630  Q
    |||| |||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  14573165 ttttacatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctc 14573082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 529 - 627
Target Start/End: Complemental strand, 41188959 - 41188859
Alignment:
Q  529 aaaaagataggtagacatcctttt-tcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||| ||||| |||||| | ||||||| || ||||||||| ||||||| || | ||||||||||| ||||||||| |||||||||| ||||||    
T  41188959 aaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatcccttttca 41188860  T
Q  627 t 627  Q
    |    
T  41188859 t 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 595
Target Start/End: Complemental strand, 36315751 - 36315684
Alignment:
Q  529 aaaaagataggtagacatcctttttc-atacaccacttatgtacatcccatgtgttaggggtatttta 595  Q
    |||||||||||||||||||||||||  ||||||| |||||||||| | ||||||| ||||||||||||    
T  36315751 aaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtatttta 36315684  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 37914238 - 37914290
Alignment:
Q  529 aaaaagataggtagacatcc-tttttcatacaccacttatgtacatcccatgt 580  Q
    ||||||||||||||||| || ||||| ||||||| |||||||||| |||||||    
T  37914238 aaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgt 37914290  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 31800747 - 31800646
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||| || |||||||    
T  31800747 aaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcat 31800648  T
Q  628 ct 629  Q
    ||    
T  31800647 ct 31800646  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 42683789 - 42683686
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    |||||||||| |||||||||||||||||||||| ||||||||||  ||||| | |||||||||||||||||| |||||||||||||| ||||| ||||||    
T  42683789 aaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttca 42683690  T
Q  627 tctc 630  Q
    ||||    
T  42683689 tctc 42683686  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 39371117 - 39371014
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  39371117 aaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttca 39371018  T
Q  627 tctc 630  Q
    ||||    
T  39371017 tctc 39371014  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 2237466 - 2237363
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||  |||| || |||||||||||| ||||| ||||||||||||||||| || ||||||    
T  2237466 aaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttca 2237367  T
Q  627 tctc 630  Q
    ||||    
T  2237366 tctc 2237363  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 40887943 - 40888046
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  ||||| | |||| ||||||||||||| |||||||||||||| || || ||||||    
T  40887943 aaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttttca 40888042  T
Q  627 tctc 630  Q
    ||||    
T  40888043 tctc 40888046  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 529 - 629
Target Start/End: Complemental strand, 13347318 - 13347216
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaatt-tacatcatatcatcatccattttca 626  Q
    ||||||||||||||||| ||||||||||||||  |||||||||| || ||||| |||||||||||| ||||||| |||||||||||||||  | ||||||    
T  13347318 aaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttca 13347219  T
Q  627 tct 629  Q
    |||    
T  13347218 tct 13347216  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 1815621 - 1815720
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| | ||||||||| |  |   ||||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||||    
T  1815621 aaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcat 1815717  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 602
Target Start/End: Original strand, 27553376 - 27553448
Alignment:
Q  530 aaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    |||| |||| |||||| ||||||||||||||| |||||||||| || |||||||||| |||||||||||||||    
T  27553376 aaaaaatagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattt 27553448  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 14831734 - 14831631
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatccc-atgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||| ||| | || |||||||||||| | ||| ||||||||||||||||| || ||||||    
T  14831734 aaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttca 14831635  T
Q  627 tctc 630  Q
    ||||    
T  14831634 tctc 14831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 630
Target Start/End: Original strand, 9408060 - 9408143
Alignment:
Q  549 tttttcatacaccacttatgtacatccc-atgtgttaggggtattttagtaattt-acatcatatcatcatccattttcatctc 630  Q
    ||||||||||||  |||||||||| ||| || | |||||||||||| |||||||| |||||||||||||| || ||||||||||    
T  9408060 tttttcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctc 9408143  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 19596069 - 19596143
Alignment:
Q  529 aaaaagataggtagacatcc-tttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    |||||||||||||||||||| ||||| | | ||| |||||||||| ||||||||| ||||||| |||||| ||||    
T  19596069 aaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcattt 19596143  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 4300545 - 4300618
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    |||||||| | |||||||||||||| ||||| | || ||||||| | |||||||||||| ||||||| ||||||    
T  4300545 aaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataattt 4300618  T

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Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 3118048 - 3118122
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtaca-tcccatgtgttaggggtattttagtaattt 602  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||||||    
T  3118048 aaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattt 3118122  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 13697757 - 13697655
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||| ||| |||||||||||  ||||||||||| |||||||||||| | ||||||||||| |||| |||||||||||| || |||||||    
T  13697757 aaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcat 13697658  T
Q  628 ctc 630  Q
    |||    
T  13697657 ctc 13697655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 24208633 - 24208531
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||||||||||| ||||||| || || |||| | ||||||||||||||||||||||||||| |||||| ||| ||| || |||||||    
T  24208633 aaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcat 24208534  T
Q  628 ctc 630  Q
    |||    
T  24208533 ctc 24208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 529 - 630
Target Start/End: Original strand, 3986907 - 3987009
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaa-tttacatcatatcatcatccattttcat 627  Q
    ||||||||||||||||||| |||||||||||    ||||||| | ||||||| ||| |||||||| ||||| |||||||||||| ||||||| |||||||    
T  3986907 aaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttcat 3987006  T
Q  628 ctc 630  Q
    |||    
T  3987007 ctc 3987009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 14023123 - 14023021
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||||||||||||||| ||||||| ||||||| |  ||||||| | ||||||||||||||||||||||||||| |||||| ||| ||| || || ||||    
T  14023123 aaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcat 14023024  T
Q  628 ctc 630  Q
    |||    
T  14023023 ctc 14023021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 629
Target Start/End: Original strand, 15345661 - 15345762
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt-acatcatatcatcatccattttcat 627  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||| || |||| ||||||| |||| |||||||| | |||||||||||| |  |||||||    
T  15345661 aaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcat 15345760  T
Q  628 ct 629  Q
    ||    
T  15345761 ct 15345762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 529 - 602
Target Start/End: Original strand, 87164 - 87237
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcccatgtgttaggggtattttagtaattt 602  Q
    ||||||||||||||||| | |||||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  87164 aaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattt 87237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 630
Target Start/End: Complemental strand, 6908 - 6805
Alignment:
Q  529 aaaaagataggtagacatcctttttcatacaccacttatgtacatcc-catgtgttaggggtattttagtaa-tttacatcatatcatcatccattttca 626  Q
    ||||||||||||||| | | ||||||||||||  |||||||||| || ||||| |||||| ||||| ||||| ||||||||||||||||| || ||||||    
T  6908 aaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttca 6809  T
Q  627 tctc 630  Q
    ||||    
T  6808 tctc 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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