View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2343_high_5 (Length: 259)
Name: NF2343_high_5
Description: NF2343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2343_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 41849127 - 41848926
Alignment:
| Q |
1 |
acgaaagaaaattttaaggagggggtttcatcttattcctaccaattgggagaacaaaaattgagggacataatggaatacannnnnnnnngt-gaaaga |
99 |
Q |
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| T |
41849127 |
acgaaagagaattttaaggagggggtttcatcttattcctaccaattgggagaacaaaaattgaaggacataatggaatacattttttttttttgaaaga |
41849028 |
T |
|
| Q |
100 |
ggtagacataatggaatacatgaataggacggaatacgtttcactatgttacattctatttcatcatatcatattattttttagattgataaattcaatc |
199 |
Q |
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| T |
41849027 |
ggtagacataatggaatacatgaataagacggaatacgtttcactatgttacattctatttcatcatatcatattattttttagattgataaattcaatc |
41848928 |
T |
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| Q |
200 |
aa |
201 |
Q |
| |
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|| |
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| T |
41848927 |
aa |
41848926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 41848882 - 41848845
Alignment:
| Q |
207 |
caatcgaaacacacagtgcaagagaaaacaatttatac |
244 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
41848882 |
caatccaaacacacagtgcaagagaaaacaatttatac |
41848845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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