View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2343_high_9 (Length: 228)
Name: NF2343_high_9
Description: NF2343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2343_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 51753376 - 51753604
Alignment:
| Q |
1 |
actatttctatgtatttttctgaaggtttcttcacattttgactttggttgacatgctgaatcttttcatgtggaatagatacctgaaatagtccaaaaa |
100 |
Q |
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| T |
51753376 |
actatttctatgtatttttctgaaggtttcttcacattttgactttggttgacatgctgaatcttttcatgtggaatagatacctgaaatagtccaaaaa |
51753475 |
T |
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| Q |
101 |
ttaaggttacatgctggctgaaatagtaaac-aattaagtgttgagaaaataaaagtgatagagagcattaacatgcacatttaagcgaaaaaatcacct |
199 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51753476 |
ttaaggttacatgctggctgaaatagtaatcaaattaagtgttgagaaaataaaagtgatagagagcattaacatgcacatttaagcaaaaaaatcacct |
51753575 |
T |
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| Q |
200 |
tatagcgcactctactcaattctcctttt |
228 |
Q |
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| T |
51753576 |
tatagcgaactctactcaattctcctttt |
51753604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 51766258 - 51766342
Alignment:
| Q |
1 |
actatttctatgtatttttctgaaggtttcttcacattttgactttggttgacatgctgaatcttttcatgtggaatagatacct |
85 |
Q |
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||||||||||||||||||||||| |||||| ||| |||||||||||||||||| || || ||||||||| |||||||||| |||| |
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| T |
51766258 |
actatttctatgtatttttctgacggtttcatcatattttgactttggttgacttgttgtatcttttcaagtggaatagagacct |
51766342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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