View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2343_low_10 (Length: 224)
Name: NF2343_low_10
Description: NF2343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2343_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 8280274 - 8280353
Alignment:
| Q |
64 |
aaaatacagtgactatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagtgtggacggcgaattgg |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
8280274 |
aaaatacagtgactatgcgacggtggtggcggcggcggacaacgagggtgaatgaagaaaaagtgtggacggtgaattgg |
8280353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 30441639 - 30441501
Alignment:
| Q |
16 |
agagataagagacaagagaaattaaaagaaaaag------gagcagaaagtatgaaaatacagtgac--tatgcgacggtggtggtggcggcgga---ca |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
30441639 |
agagataagagaaaagagaaattaaaagaaaaagaaaaaggagcagaaagtacgaaaatacagtgacaatatgcgacggtggtggtggcggcggcggcca |
30441540 |
T |
|
| Q |
105 |
acgagggtgaacgaagaaaaagtgtggacggcgaattgg |
143 |
Q |
| |
|
| ||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
30441539 |
atgagggtgaatgaaggaaaagtgtggacggtgaattgg |
30441501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 13058131 - 13058231
Alignment:
| Q |
39 |
aaaagaaaaaggagcagaaagtatgaaaatacagtgactatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagtgtggacggcga |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||| || ||||||||| |||| |||||||||||| | || |
|
|
| T |
13058131 |
aaaagaaaaaggagcagaaagtatgaaaatagagtgacaat----atgtggcggtggcggcggccagtgagggtgaatgaaggaaaagtgtggaccgtga |
13058226 |
T |
|
| Q |
139 |
attgg |
143 |
Q |
| |
|
||||| |
|
|
| T |
13058227 |
attgg |
13058231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 26995129 - 26995244
Alignment:
| Q |
30 |
agagaaattaaaagaaaaaggagcagaaagtatgaaaatacagtg--actatgcgacggtggtggtggcggcggacaacgagggtgaacgaagaaaaagt |
127 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||||| | | || |||||| ||| |||||| |
|
|
| T |
26995129 |
agagaaattaaaagaaaaagaaacagaaagtatgaaaatatagtggagatatgtgacggtggtggtggcggctaccgatgaaggtgaatgaaagaaaagt |
26995228 |
T |
|
| Q |
128 |
gtggacggcgaattgg |
143 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
26995229 |
gtggacggtgaattgg |
26995244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University