View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2344_low_1 (Length: 395)
Name: NF2344_low_1
Description: NF2344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2344_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 5298359 - 5297998
Alignment:
| Q |
14 |
taggaattaactagaattagaaaacgtgcgcatccaaaaagttgcatcaaattcaaagtccacgcattaagcatggtatagtactatagttagcttaatc |
113 |
Q |
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| T |
5298359 |
taggaattaactagaattagaaaacgtgcgcatccaaaaagttgcatcaaattcaaagtccacgcattaagcatggtatagtactatagttagcttaatc |
5298260 |
T |
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| Q |
114 |
accagttaattaccatgagaataaacgttctagtatgaacacaataagggtatactatacctttattaacttttctctcttacacgcaaagggtgtttgg |
213 |
Q |
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| T |
5298259 |
accagttaattaccatgagaataaacgttctagtatgaacacaataagggtatactataccttaattaacttttctctcttacacgcaaagggtatttgg |
5298160 |
T |
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| Q |
214 |
cctaaaattgggcactttcttagctaactagagacggttttatctttgtccatgtccattcttattttaattttggatcatgcttcataagttcatgcat |
313 |
Q |
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| T |
5298159 |
cctaaaattgggcactttcttagctaactagagacggttttatct------atgtccattcttattttaattttggatcatgcttcataagttcatgcat |
5298066 |
T |
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| Q |
314 |
ctgaagcaaagtaagggtgatgtatataacgtagcaattatgtggtaagtaactgacacgtacaatat |
381 |
Q |
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| T |
5298065 |
ctgaagcaaagtgagggtgatgtatataacgtagcaattatgtggtaagtaattgacacgtacaatat |
5297998 |
T |
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