View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2344_low_2 (Length: 375)
Name: NF2344_low_2
Description: NF2344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2344_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 49 - 358
Target Start/End: Original strand, 38661889 - 38662219
Alignment:
| Q |
49 |
cttcatgaaaagttacatttaatagtatggatacgagttgagtgcggtcacaatcccgtggccgcatgcagtcaagctcaatattttagatttcaaagaa |
148 |
Q |
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| T |
38661889 |
cttcatgaaaagttacatttaatagtatggatatgagttgagtgcggtcacaaccccgtggccgcatgcagtcaagctcaatattttagatttcaaagaa |
38661988 |
T |
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| Q |
149 |
tctgcgttgaaatctggaatattttatcttgatcaaacgatctagatgt---------------------gtacaatccaaattttcaattaatgagctt |
227 |
Q |
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| T |
38661989 |
tatgcgttgaaatctggaatatttgatcttgatcaaacgatctagatgtggttgactgcactcacaccacgtagaatccaaattttcaattaataagctt |
38662088 |
T |
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| Q |
228 |
tatactttatatattgttgtaatggtacatgatttaatgttatttcaaacaaaacnnnnnnnctaatgttatttttattgtattttattcagcattggta |
327 |
Q |
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| T |
38662089 |
tatactttatatattgttgtaatggtacatgatttaatgttatttcaaacaaaacaaaaaatctaatgttatttttattgtattttattcagcattggta |
38662188 |
T |
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| Q |
328 |
gtttgggaaaccacaactcaagagcatgtgt |
358 |
Q |
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| T |
38662189 |
gtttgggaaaccacaactcaagagcatgtgt |
38662219 |
T |
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