View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2344_low_3 (Length: 259)
Name: NF2344_low_3
Description: NF2344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2344_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12945441 - 12945676
Alignment:
| Q |
1 |
tgttcttataatttgttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaataacatgaaagattcaacctatca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
12945441 |
tgttctgataatttgttctcttgtatttgcaaagttatcaatttgtgcatcgaagtttattcgaccacccta-------catgaaagattcaacctatta |
12945533 |
T |
|
| Q |
101 |
ccagaattgaaggaaaaactatataaaaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattccgcctccacccgaggcataatta |
200 |
Q |
| |
|
||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945534 |
ccataattaaaggaaaaactataaagcaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattccgcctccacccgaggcataatta |
12945633 |
T |
|
| Q |
201 |
acaccctttagaaccattggttcacctgtagtggtagccatgt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945634 |
acaccctttagaaccattggttcacctgtagtggtagccatgt |
12945676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 12940241 - 12940310
Alignment:
| Q |
16 |
ttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaataacatgaa |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
12940241 |
ttctcttgtatttgcaaagttatcaatttgtgcatcaaagttgattcgaccaacctattaatcacatgaa |
12940310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University