View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2344_low_4 (Length: 239)
Name: NF2344_low_4
Description: NF2344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2344_low_4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 239
Target Start/End: Complemental strand, 35512884 - 35512685
Alignment:
| Q |
40 |
ctaaagataattcaaagatgagtgctagaaacaccaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcat |
139 |
Q |
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| T |
35512884 |
ctaaagataattcaaagatgagtgctagaaacagcaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcat |
35512785 |
T |
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| Q |
140 |
taagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttcc |
239 |
Q |
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| T |
35512784 |
taagacagaggccatccaaagttttccatctttctcttccacttcactgatgaacttcaaggtcttcccttcacgatcttccagactttctattatttcc |
35512685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 35504247 - 35504069
Alignment:
| Q |
41 |
taaagataattcaaagatgagtgctagaaacaccaatatcaatactaatataattaacatattgcattctcataaactataaacaccaatataaggcatt |
140 |
Q |
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| T |
35504247 |
taaagatagttcaaagatgagtgctagcaacatcagtataaacactaatatagt----atattgcattctcataaattataaacaccaatataaggcatt |
35504152 |
T |
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| Q |
141 |
aagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggtcttcccttcacgatcttccag |
223 |
Q |
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| T |
35504151 |
aacactgatgccatccaaagttttccatctttctcttcaatttcactgatgaacttcaaggtcttcccttcacaatcttccag |
35504069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 35497462 - 35497354
Alignment:
| Q |
99 |
atattgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttca |
198 |
Q |
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| T |
35497462 |
atattgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttca |
35497363 |
T |
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| Q |
199 |
aggtcttcc |
207 |
Q |
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| T |
35497362 |
tggtcttcc |
35497354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 35491240 - 35491136
Alignment:
| Q |
103 |
tgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcactgatgaacttcaaggt |
202 |
Q |
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| T |
35491240 |
tgcatgctcataaactataaacaccaatataaggcgttactatcgatgcaatccaaagttttccatctttctcttccacttcactaatgttcttcatggt |
35491141 |
T |
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| Q |
203 |
cttcc |
207 |
Q |
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||||| |
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| T |
35491140 |
cttcc |
35491136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 40161739 - 40161654
Alignment:
| Q |
102 |
ttgcattctcataaactataaacaccaatataaggcattaagacagaggccatccaaagttttccatctttctcgtccacttcact |
187 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| || || | ||| ||||||| ||||||||||| ||| ||||||| |
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| T |
40161739 |
ttgcattttcataaactataaataccaatataaggcattaacactgatccaatcaaaagtttaccatctttctcatccgcttcact |
40161654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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