View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2345_high_1 (Length: 752)

Name: NF2345_high_1
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2345_high_1
NF2345_high_1
[»] chr8 (1 HSPs)
chr8 (118-736)||(27843832-27844457)


Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 118 - 736
Target Start/End: Complemental strand, 27844457 - 27843832
Alignment:
Q  118 tatttctaaacagccatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagacactaaaaaggagtgcatgatctctacggt 217  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27844457 tatttctatatagctatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagagactaaaaaggagtgcatgatctctacggt 27844358  T
Q  218 ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcaatgaaaaatgaagaggttggatgagggct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27844357 ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcgatgaaaaatgaagaggttggatgagggct 27844258  T
Q  318 tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagcaccct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27844257 tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagtaccct 27844158  T
Q  418 tttgttttattggtggaagtctggaaaagaagtcaggggtttattggatattgaagtgcagttgggatattttatgggtatcatatacatgactcaaagg 517  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  27844157 tttgttttattggtggaagtctggaagagaggtcaggggtttattggatattgtggtgcagttgggatattttatgggtatcagatacatgactcaaagg 27844058  T
Q  518 tattg-------gtgagccatctacaatatgaagatgacccattatttattgcagaggcgtgcatggagtatttgttgtcaacgaaggctctccttaaat 610  Q
    |||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27844057 tattggtgaatggtgagccatctacaatatgaagatgacccattatttattggagaggcgtgcatggagaatttgttgtcaacgaaggctctccttaaat 27843958  T
Q  611 cgtttaaattgatgtccggtttaaagattaatttttccnnnnnnngtcggttgtttaggtttaatgtcaaccaaaatttcttagaggttgcgacgggctt 710  Q
    | ||||||||||||| |||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27843957 catttaaattgatgttcggtttaaaggttaatttttccaaaaaaagtcggttgtttaggtttaatgtcaaccaaaatttcttagaggttgcgacgggctt 27843858  T
Q  711 cattaattgcaaggcagggaaatttc 736  Q
    |||||||||||||||| |||||||||    
T  27843857 cattaattgcaaggcatggaaatttc 27843832  T

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