View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_high_4 (Length: 395)
Name: NF2345_high_4
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 36377194 - 36376818
Alignment:
| Q |
1 |
acaaaagttatacacactaaatacttgaaagtgcagaattgcagatttaaatctgcgctccaacatcaaacatctttgcagttattttttactatctgca |
100 |
Q |
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| T |
36377194 |
acaaaagttatacacactaaatacttgaaagtgcagagttgcagatttaaatccgctctccaacatcaaacatctttgcagttattttttactatccgca |
36377095 |
T |
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| Q |
101 |
catacaagaattttaggttgctaatatatttgaattgttataatgatgcaggacgcgactacaaagttaccggcagatagagcagcgacaaggagagacg |
200 |
Q |
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| T |
36377094 |
catacaagaattttaggtt------atatttgaattgttataatgatgcaggacgcgactacaaagttaccggcagatagagcagcgacaaggagagatg |
36377001 |
T |
|
| Q |
201 |
ctgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtctgcatcaatggcagccgcagctaggcttaatca |
300 |
Q |
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| T |
36377000 |
ccgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtcagcatcaatggcagccgcagctaggcttaacca |
36376901 |
T |
|
| Q |
301 |
aaagaataacaactagttgctaccttagtagttagctaccttatatatgtatattaatgg---ttatgcttttctgcttatgc |
380 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36376900 |
aaagaataacaactagttgctacctaagtagttagctaccttatatatgtatattaatggttattatgcttttctgcttatgc |
36376818 |
T |
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