View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_high_6 (Length: 346)
Name: NF2345_high_6
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 50 - 310
Target Start/End: Complemental strand, 33143427 - 33143179
Alignment:
| Q |
50 |
aaatatatgaaggatttcaatggaaggaaatgggacaagtttgatggcaaagaggttgcttcactcgaatatgcaaaaactcaaggaaaagatgcacatc |
149 |
Q |
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| T |
33143427 |
aaatatatgaaggatttcaatgggaggaaatgggacaagtttgatggcaaagaggttgcttcactcgaatatgcaaaa------------gatgcacatc |
33143340 |
T |
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| Q |
150 |
tagaggattattatcgcagggctccaaacttgatggaaagggaccagcagtttcgcccaatcgtcttttcaaagggccaagagcaggtattatttaactt |
249 |
Q |
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| T |
33143339 |
tagaggattattatcgcagggctccaaacttgatggaaagggaccagcagtttcgcccaatcgtcttttcaaagggccaagagcaggtattatttaactt |
33143240 |
T |
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| Q |
250 |
tgatctgtttgattatgtaatcttccggaattcctaatgttacattacattctcaagtatt |
310 |
Q |
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| T |
33143239 |
tgatctgttcgattatgtaatcttccggaattcctaatgttacattacattctcaagtatt |
33143179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 33143490 - 33143445
Alignment:
| Q |
10 |
attattctgatagtttctattgaatctattgcatatgcttaaatat |
55 |
Q |
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| T |
33143490 |
attattctgatagtttctattgaatctattgcatatgcttaaatat |
33143445 |
T |
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